UFO06380.5prime Sequence
1090 bp (987 high quality bases) assembled on 2009-08-18
> UFO06380.5prime
CAGTCGACATGCCAAAGTGGGCACATCTCGGGCTAGCAGCTCTCCTTCTA
ATTTCCACCACCCAGGAGGGTACTGCAGATATCGATTGGTGGGAGAACGC
CTCGCTGTACCAGATATATCCGCGCTCCTTCCAGGACAGCGATGGCGATG
GCATCGGGGACCTGAAAGGCATTACTTCGAGATTGGGCTACCTCAAGGAA
ATAGGCATCACGGCCACCTGGCTGTCGCCCATTTTTACCTCGCCCATGTC
GGATTTCGGCTACGACATCTCTAACTTTTATGACATCGATCCGATTTTCG
GCACTCTCGAGGATTTCGATGACCTTATAGTGGAGGCCAAGTCGCTGGGC
GTTAAGATCATTCTCGACTTTGTACCCAACCACTCGAGTGACGAGAACGT
GTGGTTTGAAAAGTCCGTGAATCGCGAAGATGGCTACGACGACTTCTACG
TGTGGGACGATGGAAAACTGAATGAGGAAACTGGTGCAAGAGATCCTCCA
TCTAATTGGGTCAGTGTGTTCAGCGGACCCATGTGGACGTGGAACGAGAA
GCGCCAGCAGTACTTCCTGCACCAGTTTCAGGTGAAGCAGCCGGATCTAA
ACTTTACCAATCCAATGGTCAGGGAGCACATGCTGGATGTCTTGAAGTTT
TGGCTGGACCGCGGAGTTGATGGATTTCGTATCGATGCAGTTCCACACAT
CTACGAGCACCGCAATGCAGACGGATCCTATCCGGATGACCCGGTTAGCG
GTTGGGGCAGTGACCCCAACGCCTACGACTACCATGATCACATCTACACC
AAGGACCAGCCGGCCACGGTGGATCTCATGTACGAATGGCGTGAGTTTTT
GGACAACTATCGGGCGCAGAATGGAGGCGATTCACGGGTTCTCCTGGCCG
AGGCCTATTCTTCCGTGGAGACACTAAGTGCTTACTTCGGAAACAGCACC
CATCAGGTACCAGCTGCCCATGACTTCCAGTGATGTATCTCATGGATACT
CCACCGCAGAGGTGTTGGATCTATCGACTACTGATGAATACATGGGAGGA
ACCGACGCAATGGGTTGTGTGTATACGAATCACGATGCCG
UFO06380.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mal-A2-RA | 2036 | CG8694-RA | 18..1065 | 4..1041 | 4950 | 98.7 | Plus |
| Mal-A6-RC | 1892 | CG30360-RC | 163..515 | 111..463 | 460 | 75.4 | Plus |
| Mal-A6-RD | 2291 | CG30360-RD | 163..515 | 111..463 | 460 | 75.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8453644..8454682 | 4..1033 | 4780 | 98.5 | Plus |
| 2R | 25286936 | 2R | 8465320..8465672 | 111..463 | 460 | 75.4 | Plus |
| 2R | 25286936 | 2R | 8471170..8471538 | 455..87 | 360 | 73.2 | Minus |
| 2R | 25286936 | 2R | 8463133..8463335 | 189..391 | 250 | 74.9 | Plus |
| 2R | 25286936 | 2R | 8472103..8472452 | 111..460 | 235 | 71.1 | Plus |
| 2L | 23513712 | 2L | 11850478..11850615 | 111..248 | 195 | 76.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:04:31 has no hits.
UFO06380.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:52 Download gff for
UFO06380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LvpD-RA | 10..1072 | 1..1050 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:06 Download gff for
UFO06380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mal-A2-RA | 15..1077 | 1..1050 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:49:06 Download gff for
UFO06380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mal-A2-RA | 15..1077 | 1..1050 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:49:06 Download gff for
UFO06380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8453641..8454703 | 1..1050 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:06 Download gff for
UFO06380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4341146..4342208 | 1..1050 | 98 | | Plus |
