UFO06381.5prime Sequence
1094 bp (989 high quality bases) assembled on 2009-08-18
> UFO06381.5prime
CAGTCGACATGTCTGAACTTCAGTCATCTTTACTGTTAAAAAAACAATTG
GCAGAACTAAACAAGAATCCAGTGGAAGGATTCTCCGCTGGTTTAATTGA
TGAGAATGATATATTTCGCTGGGAAGTTTTAATAATTGGACCGCCAGATA
CACTGTACGAAGGAGGATTCTTTAAAGCTCATCTTTACTTTCCTAAAGAA
TATCCGTTGCGTCCTCCTCGAATGAAGTTTGTTACAGAAATTTGGCACCC
AAATATTGAGAAGAATGGAGATGTCTGTATTTCTATTTTACATGAGCCTG
GAGACGATAAATGGGGCTACGAAAAAGCATCGGAGCGCTGGTTACCCGTG
CATACAGTGGAGACTATCTTGATATCTGTAATATCAATGCTGGCCGATCC
GAACGATGAGTCTCCAGCAAACGTAGATGCTGCCAAGGAATGGCGAGAAT
CCTATACCGACTTTAAACGCAAAGTTGCTCGCTGCGTCAGAAAAAGTCAG
GAGGAGTGCTCGGCCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCC
AGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAG
CCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAA
CGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGG
TCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTA
CGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTC
TGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGC
GGCATCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAAACG
GGGGCGAAGAAGTGTCCATATGGCACGTTTAAATCAAACTGGTGAACTCA
CCCAGGATGCTGAAACGAAAAACATATCTCAATAACCCTTAGAAATAGCA
GTTCACGTAACACGCCACATCTGCGAATATATGGTAGAACTGCGAATCGT
CTTGTATTCACTCGGCGATGAAACGTCATTGTCTATGAAACGTA
UFO06381.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG40045-RA | 740 | CG40045-RA | 164..667 | 9..512 | 2520 | 100 | Plus |
CG40045-RD | 737 | CG40045-RD | 164..664 | 9..512 | 2465 | 99.4 | Plus |
CG40045-RB | 868 | CG40045-RB | 336..795 | 53..512 | 2300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 24035432..24035786 | 158..512 | 1775 | 100 | Plus |
3L | 28110227 | 3L | 24030752..24030857 | 52..157 | 530 | 100 | Plus |
3R | 32079331 | 3R | 13717609..13717904 | 439..144 | 310 | 73.6 | Minus |
3L | 28110227 | 3L | 24028678..24028723 | 9..54 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:51:59 has no hits.
UFO06381.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:51 Download gff for
UFO06381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40045-RA | 152..667 | 1..519 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:16:38 Download gff for
UFO06381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40045-RA | 158..673 | 1..519 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:14 Download gff for
UFO06381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG40045-RA | 158..673 | 1..519 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:14 Download gff for
UFO06381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 24028672..24028723 | 1..54 | 92 | -> | Plus |
3L | 24030755..24030857 | 55..157 | 100 | -> | Plus |
3L | 24035432..24035786 | 158..512 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:16:38 Download gff for
UFO06381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 24021772..24021823 | 1..54 | 92 | -> | Plus |
arm_3L | 24023855..24023957 | 55..157 | 100 | -> | Plus |
arm_3L | 24028532..24028886 | 158..512 | 100 | == | Plus |