UFO06382.5prime Sequence
1103 bp (985 high quality bases) assembled on 2009-08-18
> UFO06382.5prime
CAGTCGACATGAATCGAACTTCGCTGTCCAGTGGCAGCACCAGCCGCAGA
CTTCCGGCTCTCTTGTTTGTCCTGCTGCTCTGCCTGGTGGCCAGGACCAA
CGGTCGTCCTTCGCAAGAGGACGAGAGCGACTTGGCCATCATTCCGCCGG
ATGCCGACAATGTGGAGATCCATAAGGTTAAAATAGTGAACGGTGTCATG
CAAGAAGATCATCCGGTTATCATGTACAAGGAGGACTTCGTCAGCGAGGA
TTATGATCCAACAAAAAGCGAAACAAATCCTAGTCACCACAAGAAGCATA
AGCGGACGCGGCTCCATCATGCAAAGCAAGTAACTGGAACAGAAAAGAAG
GAGGACCAGATCCTTTTCGATATTCTGCCCGACAAGCCGATCGTCCTGGA
AGAGGACCTCAAGGCTCTCCCACACAGCAAAGTTGGGGCTGCCCAACTGG
CGGAACCCATCAAGGAAGAGTGGCTGGCTAAGCATCCCAAGAAGTACCAC
AGTCGCCAGCGACGACAGGCTCCTGTAAGCTTTGAGAAAGTCCTGCAATA
CTACTATGGCACTCCGGAAATAAAATTTGTGTCTCCCTTAACTTATACGC
ATTTTCGCATTTCAGTGAAGGGTAAGAAACCCCATCTGGTGGGGCCTCCG
AATCGTAGGAATCAGGGCCAAGAGAATATCCCAACGCCAGACTCGGTCGA
TTCTAGAGGAGAATTCGATTTAATACACAATTCAAATCAAGCGGATGCGG
ATTTCTCGATCTACAACCGTTCGTCTACGACTACTGCCAGGCCAATCTTT
CAAATCAATGATAGTGACTTTGTGACCTCGGCACCATCGTGGCGTCCGTC
GAACAGCATACGCCGGCCGCCCCCACCCGCTCCCCCGTTGTGGGACTGCC
CACCATGCGGCCCAACGCAAGGCCTGTCCCTCATATACAGGGGGGTCGAT
ATGGACCCAAGTCAACTGGTGTGTGTTGGTCGATCGTCAAATGGCTGCAC
GGCCAAAGCCAAAAAGGTGCCGTACAAACTGCCTTCGAGGATTTCGATGC
CATGAAGCCTTTCGGGAACTCAATCCGTGGTGGCCGAAATGGCAGAAAGG
TGC
UFO06382.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hdly-RC | 2132 | CG5630-RC | 136..1205 | 9..1079 | 4805 | 97.2 | Plus |
| hdly-RB | 1685 | CG5630-RB | 136..1205 | 9..1079 | 4805 | 97.2 | Plus |
| hdly-RA | 1386 | CG5630-RA | 136..1205 | 9..1079 | 4805 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20926344..20926690 | 255..601 | 1735 | 100 | Plus |
| 3R | 32079331 | 3R | 20926757..20926977 | 602..822 | 1105 | 100 | Plus |
| 3R | 32079331 | 3R | 20925944..20926102 | 9..167 | 795 | 100 | Plus |
| 3R | 32079331 | 3R | 20927187..20927443 | 822..1079 | 520 | 87 | Plus |
| 3R | 32079331 | 3R | 20926163..20926252 | 166..255 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:00:32 has no hits.
UFO06382.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:58 Download gff for
UFO06382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5630-RB | 100..1063 | 1..964 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:11 Download gff for
UFO06382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5630-RA | 130..1093 | 1..964 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:38 Download gff for
UFO06382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hdly-RA | 130..1093 | 1..964 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:38 Download gff for
UFO06382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20925938..20926102 | 1..167 | 97 | -> | Plus |
| 3R | 20926165..20926252 | 168..255 | 100 | -> | Plus |
| 3R | 20926345..20926690 | 256..601 | 100 | -> | Plus |
| 3R | 20926757..20926977 | 602..822 | 100 | -> | Plus |
| 3R | 20927188..20927331 | 823..964 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:11 Download gff for
UFO06382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16751660..16751824 | 1..167 | 97 | -> | Plus |
| arm_3R | 16751887..16751974 | 168..255 | 100 | -> | Plus |
| arm_3R | 16752067..16752412 | 256..601 | 100 | -> | Plus |
| arm_3R | 16752479..16752699 | 602..822 | 100 | -> | Plus |
| arm_3R | 16752910..16753053 | 823..964 | 93 | | Plus |
