Clone UFO06384 Report

Search the DGRC for UFO06384

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:63
Well:84
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCyp4p1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO06384.5prime Sequence

1058 bp (962 high quality bases) assembled on 2009-08-18

> UFO06384.5prime
CAGTCGACATGATTATCTTGTGGCTGATTCTGGCCCTAAGTGCCCTGCTC
TACTGGCTCCACAGAGCCAACAAGGATTACCACATCCTGTCCTTCTTCAC
CAAAAGAATTCGATTAAAGGATGGAACCCCTGTGGAGATCATCGCTCCCA
TAGCCAAGGGAAAAACAATATTCGGCAACACCCTTGACTTGTATGGGCGA
GATCACGCTGGTGTTTTCAATTACTCGCGTGAGCGTGCTAAGGAAATGGG
TACTAGCTACATAGAATATGTCTTTGGAAAGGCGATTTACAACATTATCG
ATGCGGATAGCGCGGAAAATGTGCTGAATCATCCGAATCTCATAACCAAG
GGGCTCGTCTACAACTTCCTACATCCATTCCTAAGGACGGGCTTGCTGAC
ATCGACTGGCAAAAAATGGCATGCTCGCCGCAAGATGCTCACTCCGACAT
TCCATTTCAACATATTGAACCAGTTCCAGGAGATCTTTAAAACGGAGAGT
CAAAAGTTCCTGCTACAATTTGAGGGTCAAGATGAGGTAACCATAACGTT
ACACGATGTTATTCCAAGATTTACTCTAAACAGTATTTGTGAAACCGCCA
TGGGTGTTAAGCTCGACGAGATGGCCGAGAAGGGGGATCGATACCGGGAG
AACTTCAGTCAGATTGAAGAATGCTTCATTCGTCGCTTGAGTAACCCACT
TTTATGGGGCGACAAGCTTTTCGAAATGTTTGCTGCCAAGGATTTCGCTT
CCGCACTCGATGTGGTTCATAGATTTTCGAGCGAGATTATTGCCAAAAGG
AGGGACTTGCTAAAGGATGAGCTGGACAAAGTTCAAGCACCGCTGATGAT
GATGGATTTGTCTCAAAGAAGCGTTTCGCCATGCTGGACACCCTAATTAT
GCTGAGAGATGGCTCATCGATCACATTGGATTTGTGAGAGGTGACACTTG
ATGTTTGAGGCTACGATACTACCTCATGGGCTCATTTTGTCTAATGAACA
TGTCCCTACGACAGCAGAGTTATGTTACAGGGAATCAGACCATAATGATG
ACTGACAC

UFO06384.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:13
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4p1-RA 1680 CG10842-RA 42..1055 9..1008 4750 98.6 Plus
Cyp4p3-RA 1667 CG10843-RA 166..1056 134..1004 1420 78.5 Plus
Cyp4p2-RA 1777 CG1944-RA 363..693 325..655 305 73.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9240908..9241173 591..855 1280 99.6 Plus
2R 25286936 2R 9240339..9240541 207..409 1015 100 Plus
2R 25286936 2R 9240082..9240280 9..207 995 100 Plus
2R 25286936 2R 9243204..9243428 597..821 645 85.8 Plus
2R 25286936 2R 9240737..9240842 486..591 515 99.1 Plus
2R 25286936 2R 9240603..9240685 408..490 415 100 Plus
2R 25286936 2R 9241232..9241398 855..1008 290 92.2 Plus
2R 25286936 2R 9242900..9242978 411..489 200 83.5 Plus
2R 25286936 2R 9242640..9242785 207..352 190 75.3 Plus
2R 25286936 2R 9238097..9238172 414..489 185 82.9 Plus
Blast to na_te.dros performed on 2014-11-28 19:52:12 has no hits.

UFO06384.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:57 Download gff for UFO06384.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4p1-RA 40..1097 9..1042 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:34 Download gff for UFO06384.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4p1-RA 42..1099 9..1042 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:32 Download gff for UFO06384.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4p1-RA 42..1099 9..1042 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:32 Download gff for UFO06384.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9240082..9240280 9..207 100 -> Plus
2R 9240340..9240540 208..408 100 -> Plus
2R 9240604..9240685 409..490 100 -> Plus
2R 9240742..9240842 491..591 100 -> Plus
2R 9240909..9241173 592..855 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:34 Download gff for UFO06384.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5127845..5128045 208..408 100 -> Plus
arm_2R 5128109..5128190 409..490 100 -> Plus
arm_2R 5128247..5128347 491..591 100 -> Plus
arm_2R 5128414..5128678 592..855 99 -> Plus
arm_2R 5127587..5127785 9..207 100 -> Plus