UFO06385.5prime Sequence
1095 bp (981 high quality bases) assembled on 2009-08-18
> UFO06385.5prime
CAGTCCGACATGTCCGCAGGTCGAGTGGTTATTTACGGTGGCAAAGGAGC
CTTGGGTTCGGCCTGTGTCGATCACTTTAAAGCCAACAATTATTGGGTTG
GCAGCATCGATCTGACGGAGAACGAGAAGGCCGACGTTAGCATTGTGGTG
CCACGCGATGCTAGTTGGGTGGAACAGGAGGAAACGGTGGTGTCCAAAGT
CGGGGAATCCCTTGCCGGCGAGAAACTGGATGCCGTCATCTGCGTGGCTG
GCGGCTGGGCAGGTGGTAATGCCAAGAAGGATCTGGCCAAGAATGCCGAT
CTCATGTGGAAGCAGAGCGTGTTGACCTCCGCCATTTCGGCAGCTGTGGC
TGCTCAGCATCTAAAGGCCGGAGGCTTGCTGGCTCTCACTGGAGCTAAGC
CCGCTTTGGAGGGCACACCCGGTATGATCGGCTATGGAATGGCCAAGGCA
GCTGTCCACCAGCTGACCCGCTCGCTGGGCGCTGAGAAATCCGGTCTGCC
AGCTGGTTCCCTGGCTGTGTCCATACTTCCCGTAACTCTAGATACACCCA
TGAACCGTAAATGGATGCCGGATGCAGATTTTGGAACCTGGACACCGCTC
ACCGAGGTGGCCGGACTTTTCCTTAAGTGGACCCAAGATCAGGAGAGGCC
CAAAACTGGATCCCTGTTGCAGCTGATCACCACAAACGGCATTACGCAGC
TTATCGCTGCCGAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAA
ACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATA
CGCCCCGCCCTGCACTCATCGCAGTACTTGTTTTTAATTCATTAGCATCT
GCCGACATGGAAGCCATCACAAACGCATGATGACTGATCGCAGCGGCATC
AGTACGTTGTCGCCTGGTTATATATTGCCATGGTAAACGGGGCGA
UFO06385.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dhpr-RB | 880 | CG4665-RB | 40..745 | 9..714 | 3530 | 100 | Plus |
| Dhpr-RA | 1261 | CG4665-RA | 247..952 | 9..714 | 3530 | 100 | Plus |
| Dhpr-RC | 1087 | CG4665-RC | 247..952 | 9..714 | 3530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9134987..9135607 | 94..714 | 3105 | 100 | Plus |
| 3L | 28110227 | 3L | 9134806..9134890 | 9..93 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:56:33 has no hits.
UFO06385.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:06 Download gff for
UFO06385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhpr-RB | 30..751 | 1..721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:56:20 Download gff for
UFO06385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhpr-RC | 237..958 | 1..721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:36 Download gff for
UFO06385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhpr-RC | 237..958 | 1..721 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:36 Download gff for
UFO06385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9134796..9134890 | 1..93 | 95 | -> | Plus |
| 3L | 9134987..9135613 | 94..721 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:56:20 Download gff for
UFO06385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9127896..9127990 | 1..93 | 95 | -> | Plus |
| arm_3L | 9128087..9128713 | 94..721 | 99 | == | Plus |
