UFO06387.5prime Sequence
1059 bp (986 high quality bases) assembled on 2009-08-18
> UFO06387.5prime
CAGTCGACATGGTGCAAAACAGAATGTCGACATCAGTGATTGTTTTGTAC
GCGCTTATGTGTATCGCATTTTCCACAGCTTCGTTAAATGATATTCCCGA
AATCACCCCCGCAATAGATAACAATTTATCTTTTCAATACGACGATACCT
GCTGGACTCCTCCGAGGATTAAAAATGCTAAGGCATCCGTCAAACTTCGC
CGAAATGGGGAACATGTCTTTCTTGTGACCTATTATTCCTGCCGCGTCAA
CTACAAACTCAAACGTGCCAAAGATAATGCACTCTATTGCTCAAATGGTA
TATGGCTTGGTTTGAAACCCAATTGCATAAAGATTGGTAAAGGAAACACG
CATTCAATGAAGCAAAAAAAAATGAGATGCAGGATTGATAATGGTGGTTG
CGCTCATATATGTAACAGATCAACTCATAAATGCGAATGCTATGAGGGTT
ATACACTGAATTCCACCGATTTAAGAAGCTGTAATGATATCGACGAGTGC
AAGGAATCGAATGGCGGCTGCTCTCAAGTTTGCAACAACCTTCCTGGTGA
ATTCATATGCACCTGTAATAGTGGTTTTGAAATAGACGAAAGTGATGAAA
AAACTTGCTTGGACATTGATGAGTGCGCTGATCCCGAACTATCGTGGGAC
TGTACGGCTGGATGTAAAAACCTAAATGGAACATACAAATGCCTTCCGTC
ACTGGTGGGCAGAGTTGAGCCCACCGACGGCGATGGTTTCTCCCCGGGTG
AAATAGTGTGCAAGTCCGGATTCAAGCTGTCCGACGATGGCAGTGAGTGT
CAGACATTAACGAATGCGATTTGGCGGATATTGATTCAGATTCTTGGCGA
ATGACTTACCGTTACTGTGAGCACAAATGCGAGATACGGTAGTTCCTATA
TCTGCCATTGCCCCAAGATATCATCTACTCGATGATCAAAATAGTTGTAT
TTTGGATGGCTCAATACGCATCGAAGACGCGCCTGTCAGTCAGGAGCACA
GAATGATTATGCCTTGTTTAGGACAGCAACGAAAGCTCTGCATAGTATCT
CAATGGCTC
UFO06387.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32373-RC | 1812 | CG32373-RC | 279..1276 | 9..995 | 4725 | 98.9 | Plus |
| CG32373-RB | 2066 | CG32373-RB | 533..1530 | 9..995 | 4725 | 98.9 | Plus |
| CG32373-RA | 1979 | CG32373-RA | 446..1443 | 9..995 | 4725 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7758030..7758385 | 612..962 | 1550 | 98.3 | Plus |
| 3L | 28110227 | 3L | 7757288..7757587 | 75..374 | 1500 | 100 | Plus |
| 3L | 28110227 | 3L | 7757827..7757953 | 486..612 | 635 | 100 | Plus |
| 3L | 28110227 | 3L | 7757652..7757764 | 374..486 | 565 | 100 | Plus |
| 3L | 28110227 | 3L | 7757110..7757179 | 9..78 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:26:24 has no hits.
UFO06387.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:05 Download gff for
UFO06387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32373-RB | 491..1505 | 1..1006 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:08 Download gff for
UFO06387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32373-RA | 439..1453 | 1..1006 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:14 Download gff for
UFO06387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32373-RA | 439..1453 | 1..1006 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:14 Download gff for
UFO06387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7757103..7757179 | 1..78 | 94 | -> | Plus |
| 3L | 7757292..7757587 | 79..374 | 100 | -> | Plus |
| 3L | 7757653..7757764 | 375..486 | 100 | -> | Plus |
| 3L | 7757828..7757953 | 487..612 | 100 | -> | Plus |
| 3L | 7758031..7758434 | 613..1006 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:08 Download gff for
UFO06387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7750203..7750279 | 1..78 | 94 | -> | Plus |
| arm_3L | 7750392..7750687 | 79..374 | 100 | -> | Plus |
| arm_3L | 7750753..7750864 | 375..486 | 100 | -> | Plus |
| arm_3L | 7750928..7751053 | 487..612 | 100 | -> | Plus |
| arm_3L | 7751131..7751534 | 613..1006 | 96 | | Plus |
