UFO06388.5prime Sequence
1102 bp (991 high quality bases) assembled on 2009-08-18
> UFO06388.5prime
CAGTCGACATGGCGCCCACAAAAGCAACAACGCGCGCGGCCATCACAAGC
GGGCATCATCAGCTGCAGCAGGCAGTGAATCCCATCCTGGGAGCCCTGGG
AGCTGCCACTAGGAAGGGACTGACTCGGAGGGCGGCTGCCACGGGAAACA
TCGATCCGAATGTGGAGAATATGCAGACGCGCGCCAAACGCAAGGCCGAC
CACAGTCCAATTAAAAATGACAAAATCAAGCGCTCGGCGCTGGGTAACCT
GACCAACAATGTTAAGATCATGACACTGCATCCGGCACAGGATGAGGAGC
AGTCGGGCGTGGGCAAAAAGCCAACGGCCCAGCAGCTGCAGGCCCTGATG
GATGCTAAGAAACAGGAGAATCTCAGCGTAAATGTCTTTGGCGCCAGTAA
GATGACTACGCGCGCCTCCAGTAAAGTGGAGGATTCGGTGGAGAACTGCC
ACAAAGTGCTCGATAAGCTGGAAGAGGCGTTGGCCAGGCCCAAACCGCGC
CCCAAGGCAGTGCCTGCCGCAAAAAAGACCGTTTTGGGGGAGGTTCAGCT
ACCGGCCATGCCAAATCCTATGCAGATTCCCGTTTTACTGCCGCCCACGC
ACAATCTGGCTGCTCCCCAGGTTGCCGCCGTCAAGCCAGTTCGTCGGATC
TCCAATGACTTCAACAAGACTGAGGACAGCCTGTACATGTCCGCGCTGGA
GGATGTCTCCAGTTGCGACTCCATGCGGCTGTCTGGAAACTTTGAGGCGG
CGCGACGTCGCTCCGCCAAGTTGCAGCAAAAGACTGAGCAGCAGCCACAG
CCGCTGTTGCTGACACTCCCAGAGACTGCTCCAAGCCAGGTGGTGCCCAT
TCCGCCAGTGCCCGAGGAAGTAGAGGACTTCGACCGCAGACTGGGACGAT
CCCTTCCAGGTGTCCCACTACGCCATGGATATATTCACTACCTCAAAGTG
CGCGAAGCGGATTCCCATGCCGACTATATGCCCAGGCAGATCCATCTGAC
CACCTGATGCGCACCTGTTGTCGACTGGGATTGTGAAGGGCAGAACGTTC
GAGCTGAACACGAGACTCTTTTACTACGTAGATCGTCGATCTGTATCTCT
GG
UFO06388.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CycB3-RB | 2883 | CG5814-RB | 289..1397 | 9..1101 | 5045 | 97.9 | Plus |
| CycB3-RA | 2461 | CG5814-RA | 289..1397 | 9..1101 | 5045 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24869525..24870528 | 1006..9 | 4765 | 99 | Minus |
Blast to na_te.dros performed 2014-11-28 23:04:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 219..285 | 768..836 | 133 | 68.1 | Plus |
UFO06388.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:04 Download gff for
UFO06388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB3-RA | 360..1476 | 1..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:48 Download gff for
UFO06388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB3-RA | 281..1397 | 1..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:49 Download gff for
UFO06388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CycB3-RA | 281..1397 | 1..1102 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:49 Download gff for
UFO06388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24869419..24870536 | 1..1102 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:48 Download gff for
UFO06388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20695141..20696258 | 1..1102 | 97 | | Minus |
