UFO06392.5prime Sequence
1107 bp (996 high quality bases) assembled on 2009-08-18
> UFO06392.5prime
CAGTCGACATGCCTATCATGTACAACACGGGGGAGTGGTTCAAGGTGCGA
CCGGACTACTACAGAAAAGTGGAACTGGCTACGCCTGATTGGCCTCTGGA
CCTGGACTTGGAGTATATGTGGGTGGAAGTGGCTCCCTATGGAGGACCAC
TGGCGGTCACTCGTGATCCGACCAAATTGGTGCCGGTAAAGGGTAACGCT
AGACCCATGATTCGCATCTTTGATACCACCGGCAGGGAAATGGGTCACAT
ATTGTGGAACCATGGCAAACTTATTGCCATGGGCTGGTCAGACATGGAGG
AGCTTATCTGCATCCAGGAGAACGCCACCGTCTTTGTCTACGACATGTTT
GGTCGGGAAAAGGAGTCCTACAGCATCGGCGATGAGGCCAGTGTCACAAA
GATTGTGGAGGGCAAGGTGTTCCAGTCCTCAGCTGGCACAGGAGTGGCTG
TAATGACCACATCCGGTCGGGTTTTCCTCAAGCAGAACAGCAGCAAGACT
GAAAGAAAGCTGCCGGATATTCCCAATTCCAGCATGAACTGTTCCTGCTG
GGAGATCGTAACCGAGGGACGCAACAGCTACTGTCTGCTGGGAAGGGATC
GAGAGGTCATAAAGCTGTTTCCAGGCGAAACTGTGGGAACTATTACCGCC
AATCTCTTTGAGAAACCGCACGAGCGAATCATAAAGATATCTGTGTCGTA
CAACCATCAGCACTTGGCACTGTACACCAACACCGGTCTTCTTTGGCTGG
GCAGCGTAGATATGCGGCAAAAGTATTGTGAATTCGACACCGGACGTAAA
GATATGCCCCTCCAAATGGAGTGGATCATGAACTCTGACACAGCGAGGCG
GATGCGGTGGTCATTTCATATCCATCGTACCTCTTAATTGTAAATCGTAC
GGCTGATCGCAGTGACTTTCCCTACGATCCGGTGATGTTTCTTGTGGACT
GACATGGATGGCGTTCGCATTATTACTCAGAGTTCCGCATGAAATAATAC
GCGCCTGCCAAAGGCCATGCAAAACATATATTGCCTGAATAGCCAGGTAT
CCCGACTAGCCTCTCTTGAGGCTCAAAAAAAGTTGGAAGCAAACTCCTAC
AAGTCGA
UFO06392.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vps16A-RA | 2741 | CG8454-RA | 102..1201 | 7..1106 | 4970 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9267810..9268296 | 526..1012 | 2200 | 98.6 | Plus |
| 3R | 32079331 | 3R | 9267488..9267759 | 254..525 | 1360 | 100 | Plus |
| 3R | 32079331 | 3R | 9267243..9267436 | 61..254 | 970 | 100 | Plus |
| 3R | 32079331 | 3R | 9267120..9267177 | 7..64 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:45:28 has no hits.
UFO06392.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:02 Download gff for
UFO06392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps16A-RA | 83..1188 | 1..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:10 Download gff for
UFO06392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps16A-RA | 96..1201 | 1..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:16 Download gff for
UFO06392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vps16A-RA | 96..1201 | 1..1106 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:16 Download gff for
UFO06392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9267114..9267177 | 1..64 | 96 | -> | Plus |
| 3R | 9267247..9267436 | 65..254 | 100 | -> | Plus |
| 3R | 9267489..9267759 | 255..525 | 100 | -> | Plus |
| 3R | 9267810..9268390 | 526..1106 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:10 Download gff for
UFO06392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5092836..5092899 | 1..64 | 96 | -> | Plus |
| arm_3R | 5092969..5093158 | 65..254 | 100 | -> | Plus |
| arm_3R | 5093211..5093481 | 255..525 | 100 | -> | Plus |
| arm_3R | 5093532..5094112 | 526..1106 | 94 | | Plus |
