UFO06393.5prime Sequence
1084 bp (968 high quality bases) assembled on 2009-08-18
> UFO06393.5prime
CAGTCGACATGTCACGGATCGTTTTTATATGTCTCGCAGCCATCTTAACA
GATGCACTCACCTGGGCCCAGGTGAATGTGGAACCCAACACAGCGCTCCT
CAACGAAGGCGATCGCACCGAGCTGCTCTGTCGGTACGGCAGATCCATCA
ACTACTGCCGCATTGAGATTCCCGGCGAGCAGAAGGTACTCAACCTGTCG
CCGGAGTGGAGCAAGACACCCGGATTCACGTACTTCGGAGCGGGTCTCAC
GGCCGGACAGTGCGGCGTGAGCATCGAGAGGGTCAAGGCCAGCAACAATG
GCCAGGTCAAGTGCAGTCTGGGCGTCGAGGGAGAGGAGCTGTCGGGCACC
ATCGACCTGGTCGTGGCACTGCGTCCCCAGCAGCCCATCATCGAGCTGTT
GTCGCGGCCAAATCGCGAGGGCTACTTCAACGAGGGCACTGAATTCAGGG
CCCGCTGCAGCGTTCGCGATGGCCGTCCGCCGGCTAACATCTCGTGGTAC
ATCGACAACATGCCGGCCAACAAGCGCACCACTCCCCTGGAGGTCATGTC
CTCGACCAACGACAACGTGGAGCTATCGACCTCCGTGCAGGAAATCCAGT
GGCACCTGTCGCCCGAGGACAGCAACCGGAAACTGGTCTGCCGCTCCCAC
CACCAAACCGATCGCGAGAGTGTGCCGCCCCAGGAAGCTGCCTACATCAT
CAACGTGCGCTATGCTCCCGTCCATCAGCCAGATGCCGCCGTGTATGGAC
TCTACCTCGAGCACACTGCCATTGTGAACATAACCATCCGCGCCAGTCCG
CAGCCCAAGATCGAGTGGACCATCGATGGAGCTATTGTGGGGCAGGACGC
ACCGATGGACGCTACTCGGCGTATGAGCCGCAGTATCTGGGCAACGATGA
GTACAACGTTACACTGGTCCATTGGCGGACTGACCCTGGAAGATACCACC
AAAATCTACATCTGAGGGCCGCATGGACTGGGACTGACGGACTACCAGTT
GCGATCAGTCGTCAGCAACGCCCACCACAGCCTCGATGTGGCGCATCGTG
CATGTGGTCGCGTGCGTTGTCTGTCGTTACTGAT
UFO06393.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fas3-RF | 2422 | CG5803-RF | 586..1630 | 8..1043 | 4905 | 98.6 | Plus |
| Fas3-RG | 3265 | CG5803-RG | 586..1630 | 8..1043 | 4905 | 98.6 | Plus |
| Fas3-RE | 2567 | CG5803-RE | 586..1630 | 8..1043 | 4905 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18383839..18384180 | 370..711 | 1710 | 100 | Plus |
| 2L | 23513712 | 2L | 18383399..18383719 | 49..369 | 1605 | 100 | Plus |
| 2L | 23513712 | 2L | 18384459..18384754 | 712..1004 | 1195 | 96.6 | Plus |
| 2L | 23513712 | 2L | 18320687..18320730 | 8..51 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:36:24 has no hits.
UFO06393.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:01 Download gff for
UFO06393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fas3-RC | 587..1654 | 8..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:33:00 Download gff for
UFO06393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fas3-RD | 586..1653 | 8..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:29 Download gff for
UFO06393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fas3-RE | 586..1653 | 8..1061 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:29 Download gff for
UFO06393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18383402..18383719 | 52..369 | 100 | -> | Plus |
| 2L | 18383839..18384180 | 370..711 | 100 | -> | Plus |
| 2L | 18320687..18320730 | 8..51 | 100 | -> | Plus |
| 2L | 18384459..18384822 | 712..1061 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:33:00 Download gff for
UFO06393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18320687..18320730 | 8..51 | 100 | -> | Plus |
| arm_2L | 18383402..18383719 | 52..369 | 100 | -> | Plus |
| arm_2L | 18383839..18384180 | 370..711 | 100 | -> | Plus |
| arm_2L | 18384459..18384822 | 712..1061 | 94 | | Plus |
