UFO06394.5prime Sequence
537 bp (178 high quality bases) assembled on 2009-08-18
> UFO06394.5prime
CAGTCGACATGACGGCGGCCACGGGTGGTGGGAGTAGTGGGGCGGGGGGT
GGTAAAACTGGAAAGCACAGGTCGAGGTCATCTGCCCGCTACCACGATGT
GGAAAAGCAGCAGAGGAAAAGCCGAGCCATCGTCTCCATACCGAACACCA
TCGAACTGAGTATGCTCGACATCGGACTGCTGTAGTTTGAAAGGATAAAG
CTCGAGGTGTATATGAAAACTATTCTCTGTGAAGAAGATGGGATCGGACC
CCGGCTATCAGTGCTTTTCTCTGCTCTGCGATCTGCGCAAAACGTTCCCG
GTCCTCTACGAAATGGAATTCCAAACTGCGGCTAAGGTGGAGAGAAACAA
TTGGCGGCTTGCTTTGAAAAAAAAAAACCTGTAGAAGAACCTTGATCCCA
AATGCAATCCCTATGACTACTACCGGGTGGTGCTCGACAATGTGGGTGGC
CTGCAGGACTCGAACTATGTGATCCCTGCCTATGTTGACGGCGTGCTTAC
TCCAAATGCGTACATATAGATTTTGGTTCTGCTGTGG
UFO06394.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ptp36E-RC | 4012 | CG7180-RC | 891..1403 | 9..516 | 1510 | 87.2 | Plus |
| Ptp36E-RB | 3524 | CG7180-RB | 291..803 | 9..516 | 1510 | 87.2 | Plus |
| Ptp36E-RA | 3415 | CG7180-RA | 294..806 | 9..516 | 1510 | 87.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18183605..18184117 | 516..9 | 1385 | 86.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:04:28 has no hits.
UFO06394.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:49 Download gff for
UFO06394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7180-RA | 284..490 | 1..207 | 95 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:03 Download gff for
UFO06394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7180-RA | 286..492 | 1..207 | 95 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:49:04 Download gff for
UFO06394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptp36E-RA | 286..492 | 1..207 | 95 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:49:04 Download gff for
UFO06394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18183919..18184122 | 1..207 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:03 Download gff for
UFO06394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18183919..18184122 | 1..207 | 95 | | Minus |
