UFO06395.5prime Sequence
1088 bp (943 high quality bases) assembled on 2009-08-18
> UFO06395.5prime
CAGTCGACATGCCGATCAACTTTAATATTGGCTTGCTGGGACATGTTGAC
AGTGGCAAGACCACCTTGGCCAAGGCTTTAAGTTCGATTTCCAGCACGGC
CGCCTTCGACAAGAATCCGCAATCAGTGGAGCGAGGCATAACTTTGGATT
TGGGCTTTAGTGGACTTTTGGTGGATGCTCCTGCGCACTTACCTCAAGGA
GAACAGCTCCAGTTCACCTTTGTCGACTGCCCCGGCCATGCAAGTCTTAT
ACGCACTATTATAGGAGGTGCCCAGATCATTGATCTCATGCTCCTGGTGG
TGGACGCCCAAAAAGGCAAACAAACCCAAACAGCAGAATGCCTCATTATC
GGGGAGCTGCTGCAGAAAAAGCTGATTGTAGTGATCAACAAAATAGATGT
TTATCCAGAAAATCAGAGGGCGTCCAAGCTGGAGAAGCTACGCTTGCGGC
TCGCAAAAACTTTGGAAGCCACCACATTCGGTGGTCAAGTGCCCATATGT
GCTGTGTCTGCTTTGCAAGGAACACATATCGCGGAGTTGCGAGAAGTACT
TAGAGAAGCCTACTTTCAGCCGCAGAGAAACCTAGCCGATCCACTCTTCA
TGTACGTTGATCATTGCTTCGGAATAAAGGGCCAGGGAACCGTTTGCACT
GGCACTCTGCTCCAGGGAAAGGTTCAGGTAAACAATGTGATTGAGCTGCC
AGCTCTTGGGGAGCAAAGGAAAGTGAAGTCCATACAGATGTTTCGCAAAA
ACGTGACCAGCGCCTCTATGGGCGACAGAATTGGGCTTTGCGTGACACAA
TTCAATGCAAAGCTGCTGGAGCGTGAATCATTACCCAACCGGGTTACCTG
AAACCCATCTATGCCGTGTGGTCTACAGTTTAAACCCATCCCGCTATTAC
AAGGAGTCATAAACGTCTATGAGGAAGATGCACATCTCCGTGGGAAACAA
CCACAGTGATGGCCAATGTACTTTTTTCCGGATACGACGGCACACTTCCA
CTTTCTACTGGACAAAGAAATACGAGTATATGGAGGACGTCCAGCCTGCG
GAGGTCACACTAATGGATGTGATCTACGCTCTGTGCAA
UFO06395.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EfSec-RA | 1613 | CG9841-RA | 71..1148 | 9..1084 | 4965 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21385017..21385837 | 1084..266 | 3370 | 97 | Minus |
| 2R | 25286936 | 2R | 21385891..21386151 | 269..9 | 1305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:20:02 has no hits.
UFO06395.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:24:47 Download gff for
UFO06395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EfSec-RA | 56..1145 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:42 Download gff for
UFO06395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EfSec-RA | 62..1151 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:57:46 Download gff for
UFO06395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EfSec-RA | 62..1151 | 1..1086 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:57:46 Download gff for
UFO06395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21385014..21385835 | 268..1086 | 97 | <- | Minus |
| 2R | 21385893..21386157 | 1..267 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:42 Download gff for
UFO06395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17272519..17273340 | 268..1086 | 97 | <- | Minus |
| arm_2R | 17273398..17273662 | 1..267 | 98 | | Minus |
