UFO06402.5prime Sequence
1090 bp (913 high quality bases) assembled on 2009-08-18
> UFO06402.5prime
CAGTCGACATGAGTTCAGATAAGAACGGTGATATCTTGCGGCCACTTAGC
GATAGCGAAGTGGACGAACTGCTTGATCTATACAAAGTTAAATTCGGTAT
AAGGAACTTCCACTACCTATTACTGTACAACCAGCGAAAATGGGACCGCC
AGCTGAGCGAGGCTCAAATACCGCGCAATGATCTGAACCACATTTCTCTG
AGAAAGCAGTTCTACACCCATCGAAGGGGAAACTTCCGGACGTGGGGCAC
CTATGTGAGCCTTCATCGGGACATCGTGCAAAGCGTCTCCTTCTTCAGCT
GGCAGCCAGATGGAGCCGCGGAGCTGTGGGAATGCCTGGAGCAAACGCAG
CTCATCGAGTGGACACAGGGAGCCCTGCTGACCAACGTTGATCTGGGATT
TTGTAATCGAGTCAAAGAGTTGGCCGTCAGCCGCGGGGTCACCGCCATTC
AACCACGCCAGTGTTTCGGGATGGTTTTGTCGCACGAGGATGCCTTTTGT
GCAAAAGTTCCAGATCTGCCCTCTGAGTTCGAGATTCGGCGATTGAGGGC
TGAGGATGCAGCCATGGTGCACGATTCCTGGCCTAACAAGGGTGAAGGCT
CACTCACTTATCTCCAGGCGCTCGTCCGTTTCAACAAATCCTTGGGCATC
TGCCGAAGCGACACTGGGGAACTGATTGCCTGAATCTTTCAGACGACTTT
TCCGGACTGGGCATGCTGCAAGTGCTGCCCAAGGCGGAGCGTAGAGGACT
AGGTGGCCTCCTAGCCGCTGCGATGAGCCGAGAATTGCTCGGGGCGAGGA
GATCACCTAACGGCCTGGATTGTCGCTACTAACTGGCGGTCGGAGCGCTG
CTCAAGCAGATCGGGTACCAGAAAGATCTGGTCAATGAGTGATAAAGCTG
GTACCGAATTCTTCAGCAAGCTATTCTAGACCATTCGTTTGGGCGCGCGG
GCCAGGTAGTGATCATAATCATAATCATATCATATCATATCACACTAGCG
TAGGAATCCTGGTCATGACTATGCTGATCTCACAATAAAGACGCCTGGCG
CACGGACGTCTGGACAATCGGATGGAGTCTGAGTCATACT
UFO06402.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14615-RB | 1826 | CG14615-RB | 169..1080 | 9..915 | 4375 | 99 | Plus |
| CG14615-RA | 1356 | CG14615-RA | 257..1168 | 9..915 | 4375 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 22448532..22449235 | 711..9 | 3440 | 99.6 | Minus |
| X | 23542271 | X | 22447929..22448137 | 915..711 | 815 | 97.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:41:53 has no hits.
UFO06402.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:58 Download gff for
UFO06402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14615-RA | 251..1168 | 1..915 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:01 Download gff for
UFO06402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14615-RA | 251..1168 | 1..915 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:11 Download gff for
UFO06402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14615-RA | 251..1168 | 1..915 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:11 Download gff for
UFO06402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 22447929..22448136 | 712..915 | 97 | <- | Minus |
| X | 22448532..22449240 | 1..711 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:01 Download gff for
UFO06402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21849765..21849972 | 712..915 | 97 | <- | Minus |
| arm_X | 21850368..21851076 | 1..711 | 99 | | Minus |
