Clone UFO06403 Report

Search the DGRC for UFO06403

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:64
Well:3
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG14253-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO06403.5prime Sequence

1144 bp (1040 high quality bases) assembled on 2009-08-18

> UFO06403.5prime
CAGTCGACATGGGTAGCCGGCCGCAGAGGATACGCCGGATTGGTGATAGT
CTGCAGATGCTAACCCGGGAAGCCAGAAGCGAAGTGGTACGCTACGAACA
TATAGTAATATGTCTCATGGTCATGATAGCAGTATTCTCCATACTATGGA
ACATAACGCTGATCATGATATCGGGTGATCTGTACGAGGGAATAGTCAGT
GCCAAACTTATCTTCCGGGAGCGCAGCGTTGATAAAATGGATGAGTCCAG
CAAGGAGATCCTTCATCGGGATTTCATCAAAGCCACCCAGTATGCCTATG
GAAGGCAGTACTCCGTGCAGGATGTCACACCTGAATCGCTGAAGAGCGAG
AGCCAAATCTTTAAGTTACCGCATATCTACGAATCTATCGAGAATCGACC
GAAATTGGAGCGTCTCATTGCTGAAAATAAAGTGGAGGTTATTTCTACCA
CGACGACTCCTCCACCGAAGATCACTTTCAATGCTGAGGCGGATCGCCAC
TTTTTGAGCACAATGTCCATCGATGTTATGGCCACTGTCTGGGAAAGAGG
ACCAGGAGCTCAGTTTGTCTACGTATTTCCCCTCATATCAGAGATCGTGG
CCATTATCTGGACAGCCATGTGTTTGATTTACCAGACAGGCAGCAAAAAG
AGCTCAGTTTTGCCGAAGCCGTGGCGCATTGTGGTGCCCTCCATCGTTAT
CTTCTCGGTGATGAGTTTGTGCAGTGTAATCTACACAATCCTGACCAATG
GCCACCTTAAGCACCTCTGTGGCCAACTGAGGGAGAATCTCACAGATCCC
ACTGCCATCACCTGCGGCGATGCCATCGCCCTGTTGCGTCCCATCATTCA
CGACCACAACGTATCCCATGATACTTATCTGGAGCTCTTCCGCTTCAGCT
ACTTGATCGGAATGGTACTGTGGATAGTGGCTCTGCTGGTCATGGTGCTG
CGTTATGTATTCGCCGTGACTCCAGCTGGTGGACATTGATGATATGTTCG
ATAGCGGACGAAATGGCTCCTGCACAAGTTCCGATTCCACCGGTTACACT
GGAGGTAGTGCAGCGAAACAGTTCCCCAGCACCAGACGCGAATGCGTCGA
AATCGGAGATGACATATCAAGGCAGGTCGCACCTGGGGCACTTG

UFO06403.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG14253-RB 1886 CG14253-RB 238..1365 9..1132 5225 98.1 Plus
CG14253-RF 2286 CG14253-RF 728..1765 99..1132 4775 98 Plus
CG14253-RA 1981 CG14253-RA 423..1460 99..1132 4775 98 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26984705..26985147 656..1098 1815 96.4 Plus
3R 32079331 3R 26983963..26984217 100..354 1275 100 Plus
3R 32079331 3R 26984276..26984434 355..513 795 100 Plus
3R 32079331 3R 26984490..26984636 509..655 720 99.3 Plus
3R 32079331 3R 26978778..26978868 9..99 455 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:44:42 has no hits.

UFO06403.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:58 Download gff for UFO06403.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14253-RB 225..1341 1..1113 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:54 Download gff for UFO06403.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14253-RB 228..1344 1..1113 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:16:51 Download gff for UFO06403.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14253-RB 228..1344 1..1113 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:16:51 Download gff for UFO06403.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26978768..26978868 1..99 96 -> Plus
3R 26983963..26984217 100..354 100 -> Plus
3R 26984276..26984434 355..513 100 -> Plus
3R 26984495..26984636 514..655 100 -> Plus
3R 26984705..26985164 656..1113 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:54 Download gff for UFO06403.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22804490..22804590 1..99 96 -> Plus
arm_3R 22809685..22809939 100..354 100 -> Plus
arm_3R 22809998..22810156 355..513 100 -> Plus
arm_3R 22810217..22810358 514..655 100 -> Plus
arm_3R 22810427..22810886 656..1113 96   Plus