UFO06403.5prime Sequence
1144 bp (1040 high quality bases) assembled on 2009-08-18
> UFO06403.5prime
CAGTCGACATGGGTAGCCGGCCGCAGAGGATACGCCGGATTGGTGATAGT
CTGCAGATGCTAACCCGGGAAGCCAGAAGCGAAGTGGTACGCTACGAACA
TATAGTAATATGTCTCATGGTCATGATAGCAGTATTCTCCATACTATGGA
ACATAACGCTGATCATGATATCGGGTGATCTGTACGAGGGAATAGTCAGT
GCCAAACTTATCTTCCGGGAGCGCAGCGTTGATAAAATGGATGAGTCCAG
CAAGGAGATCCTTCATCGGGATTTCATCAAAGCCACCCAGTATGCCTATG
GAAGGCAGTACTCCGTGCAGGATGTCACACCTGAATCGCTGAAGAGCGAG
AGCCAAATCTTTAAGTTACCGCATATCTACGAATCTATCGAGAATCGACC
GAAATTGGAGCGTCTCATTGCTGAAAATAAAGTGGAGGTTATTTCTACCA
CGACGACTCCTCCACCGAAGATCACTTTCAATGCTGAGGCGGATCGCCAC
TTTTTGAGCACAATGTCCATCGATGTTATGGCCACTGTCTGGGAAAGAGG
ACCAGGAGCTCAGTTTGTCTACGTATTTCCCCTCATATCAGAGATCGTGG
CCATTATCTGGACAGCCATGTGTTTGATTTACCAGACAGGCAGCAAAAAG
AGCTCAGTTTTGCCGAAGCCGTGGCGCATTGTGGTGCCCTCCATCGTTAT
CTTCTCGGTGATGAGTTTGTGCAGTGTAATCTACACAATCCTGACCAATG
GCCACCTTAAGCACCTCTGTGGCCAACTGAGGGAGAATCTCACAGATCCC
ACTGCCATCACCTGCGGCGATGCCATCGCCCTGTTGCGTCCCATCATTCA
CGACCACAACGTATCCCATGATACTTATCTGGAGCTCTTCCGCTTCAGCT
ACTTGATCGGAATGGTACTGTGGATAGTGGCTCTGCTGGTCATGGTGCTG
CGTTATGTATTCGCCGTGACTCCAGCTGGTGGACATTGATGATATGTTCG
ATAGCGGACGAAATGGCTCCTGCACAAGTTCCGATTCCACCGGTTACACT
GGAGGTAGTGCAGCGAAACAGTTCCCCAGCACCAGACGCGAATGCGTCGA
AATCGGAGATGACATATCAAGGCAGGTCGCACCTGGGGCACTTG
UFO06403.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14253-RB | 1886 | CG14253-RB | 238..1365 | 9..1132 | 5225 | 98.1 | Plus |
CG14253-RF | 2286 | CG14253-RF | 728..1765 | 99..1132 | 4775 | 98 | Plus |
CG14253-RA | 1981 | CG14253-RA | 423..1460 | 99..1132 | 4775 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26984705..26985147 | 656..1098 | 1815 | 96.4 | Plus |
3R | 32079331 | 3R | 26983963..26984217 | 100..354 | 1275 | 100 | Plus |
3R | 32079331 | 3R | 26984276..26984434 | 355..513 | 795 | 100 | Plus |
3R | 32079331 | 3R | 26984490..26984636 | 509..655 | 720 | 99.3 | Plus |
3R | 32079331 | 3R | 26978778..26978868 | 9..99 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:44:42 has no hits.
UFO06403.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:58 Download gff for
UFO06403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14253-RB | 225..1341 | 1..1113 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:54 Download gff for
UFO06403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14253-RB | 228..1344 | 1..1113 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:16:51 Download gff for
UFO06403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14253-RB | 228..1344 | 1..1113 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:16:51 Download gff for
UFO06403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26978768..26978868 | 1..99 | 96 | -> | Plus |
3R | 26983963..26984217 | 100..354 | 100 | -> | Plus |
3R | 26984276..26984434 | 355..513 | 100 | -> | Plus |
3R | 26984495..26984636 | 514..655 | 100 | -> | Plus |
3R | 26984705..26985164 | 656..1113 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:54 Download gff for
UFO06403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22804490..22804590 | 1..99 | 96 | -> | Plus |
arm_3R | 22809685..22809939 | 100..354 | 100 | -> | Plus |
arm_3R | 22809998..22810156 | 355..513 | 100 | -> | Plus |
arm_3R | 22810217..22810358 | 514..655 | 100 | -> | Plus |
arm_3R | 22810427..22810886 | 656..1113 | 96 | | Plus |