UFO06404.5prime Sequence
1161 bp (1027 high quality bases) assembled on 2009-08-18
> UFO06404.5prime
CAGTCGACATGCATTTCTTCATTGTGCCGTGCCTCCTAGGACTTGCAGCC
GGCATTCCTCAAGGATACAACTACCAAGCCCAGCAACAGCTTCAATCGTC
GGCGCAAGCTGGTCAACTCCATCTGCCTTCTATTCCGCAGTTTGCCACCC
TTGCGGAGCAGACGATCCTTCAGCAGGCACTCCAGGCTCCAAAGTTGCAG
CAGGTCCTGACCGGAGGAGAAGGGCTCGCATCTTACTCAAATCAAAACCA
GGCCTCCGCTTACCAACAGCAGGCGACGCAGTTCGGCCCAAATTCGGCGT
ACAATGCGCTGCCCCAGGCACATCAGCCTCAGCAGCAGCACCTCGTCTCC
AAGGACATCTACGTCCATGTGCCACCAGCAGAAGAGCCCGAGGACCGCTA
CCCTCAGCCCGTCCTTCCGCCCGCGCCTCCGCGCAAGCATTATCGCATAG
TTTTCATCAAGGCACCGACGACCAGTGTCTCGAAGGCGGCGTTGCGCATC
AAACAGGCTCCTGTGGAGGAGAAGACCATCATCTATGTGCTGACCAAGAA
GCCGGACCCACTAGATCTCCAGACTGCCATCGAGGAAATCGCGCCGAAGC
AGCCCAGCAAGCCAGAGGTATTTTTCATCAAATACAAGACCCAGGAGGAA
GCTGCGCATGCGCAACGTACCATTCAAGCTCAATATGACCAGCTTGGCGG
AACATCACAGGTTTCTGACGAGGGAGTTGCACCCGTTACATCCGTGATTG
GCGTACTGGACAACCAGCGCAACAACGGAATTTCATCCGGACAGTTTTCT
GGCTCCTTGCCAAACAGCTACTTGCCAACTAATCTGCGTGCTGCAAGCTT
TCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATA
ATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGGTCATG
ACTAGTGCTTGGATTCTCACCAATAAAAAACGGCCCCGGCGGCAACCGAG
CGTTCTGAACAAATTCAGATGGGAGTTCTGGAGGTCATTACTTGGGATCT
ATCAACAGGAGGTCCAAGCGGAGCTCGATATCAAATTACGCCCCGGCCTG
CCACTCATCGCAGTACTGTTGTATTCATTAGCATTCTGCGAATTGGGAAG
CATCAACGCAT
UFO06404.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlG-RC | 2165 | CG14643-RC | 1201..2034 | 9..842 | 4170 | 100 | Plus |
| TwdlG-RB | 1013 | CG14643-RB | 49..882 | 9..842 | 4170 | 100 | Plus |
| TwdlG-RA | 1620 | CG14643-RA | 656..1489 | 9..842 | 4170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4249191..4249845 | 678..24 | 3275 | 100 | Minus |
| 3R | 32079331 | 3R | 4248854..4249019 | 842..677 | 830 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:31:00 has no hits.
UFO06404.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:56 Download gff for
UFO06404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlG-RA | 647..1489 | 1..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:00 Download gff for
UFO06404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlG-RA | 647..1489 | 1..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:04 Download gff for
UFO06404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlG-RA | 647..1489 | 1..842 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:04 Download gff for
UFO06404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4248854..4249017 | 679..842 | 100 | <- | Minus |
| 3R | 4249191..4249845 | 24..678 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:00 Download gff for
UFO06404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 74576..74739 | 679..842 | 100 | <- | Minus |
| arm_3R | 74913..75567 | 24..678 | 100 | <- | Minus |
