Clone UFO06407 Report

Search the DGRC for UFO06407

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:64
Well:7
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG9095-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO06407.5prime Sequence

1119 bp (996 high quality bases) assembled on 2009-08-18

> UFO06407.5prime
CAGTCGACATGCACCGCACGCAGCCGTCGCTGCCGCTGCCTCTGCCGCTG
CTGGCGTTGGCGTTGGCGTTGGCTTCGGCGCTGGCTTTTGCGCAGGCGCA
GAATATAGATGCCGGTTGCAGTTTCCCGGGATCGCCGGCGCACAGCAGCG
TCGTCTTCTCGAATGCGAATCTCACCCAGGGCACGGTGGCCTCCTACAGC
TGCGAGCGGGGATTCGAGCTTCTGGGACCGGCGCGGCGTGTCTGCGACAA
GGGGCAATGGGTGCCCGAGGGCATTCCGTTCTGCGTTTTGAACGTTGCCG
CTGGCAAGGCGCCCATGCAGATTTCCACTGATGGCGCTGGTGCTCCACAA
AAGGCCATCGATGGCTCCACATCCGCCTTCTTCACACCGGAGACCTGCTC
GCTGACGAAGGCGGAGCGATCGCCCTGGTGGTATGTGAATCTCCTGGAAC
CCTACATGGTGCAACTGGTGCGTCTGGACTTTGGCAAATCCTGTTGCGGC
AATAAGCCCGCCACAATTGTAGTGCGAGTGGGCAACAACCGACCGGACTT
GGGCACAAATCCGATCTGCAACCGCTTCACGGGCCTCCTGGAGGCCGGAC
AGCCGCTCTTCCTGCCCTGCAATCCCCCGATGCCGGGAGCCTTCGTGAGT
GTCCACCTGGAGAATAGCACACCCAATCCGCTGTCCATTTGCGAGGCGTT
CGTCTACACGGACCAAGCGCTGCCCATCGAGCGGTGTCCCACCTTCCGCG
ATCAGCCGCCTGGAGCTCTGGCCTCGTACAATGCAAGTGCTACATCTTCT
ACAACCGCCAGCCGCTGAACTTTTTGGACGCACTGTCCTTCTGTCGATCC
CGTGGCGGTACGCTGATCAGTGAGAGCAATCCCGGCGCTGCAAGGATTCA
TCAGTTGGGAGCTGTGGCGGCGTCATCGCAGTGACGTCAGTTCGCAGTAC
TGAATGGGAAGCGTACGTGATGGCAGCGATCGCATCAGCTGGAATGGGTG
AACGGTGACGAGCTGACGTCTTCTTCTGAGTCATCCCGCGGCGAATGAGA
ATGGGACCGAATTGATGACTCCAGGCTGGCCTGGACGAACAAACTGCAAA
ACGCCATGCTGACGTCACT

UFO06407.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG9095-RC 4791 CG9095-RC 572..1676 9..1104 5010 97.7 Plus
CG9095-RD 4809 CG9095-RD 572..1676 9..1104 5010 97.7 Plus
CG9095-RB 5349 CG9095-RB 572..1676 9..1104 5010 97.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15145935..15146455 1017..498 2370 98.3 Minus
X 23542271 X 15148068..15148282 499..285 1075 100 Minus
X 23542271 X 15150692..15150870 285..107 895 100 Minus
X 23542271 X 15162555..15162654 108..9 500 100 Minus
Blast to na_te.dros performed 2014-11-28 23:06:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsub\GEM 1730 Dsub\GEM GEM 1730bp 144..171 52..25 113 89.3 Minus

UFO06407.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:53 Download gff for UFO06407.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9095-RB 561..1615 1..1052 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:16:02 Download gff for UFO06407.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9095-RB 564..1618 1..1052 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:49:54 Download gff for UFO06407.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9095-RB 564..1618 1..1052 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:49:54 Download gff for UFO06407.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15145898..15146454 499..1052 97 <- Minus
X 15148069..15148281 286..498 100 <- Minus
X 15150692..15150868 109..285 100 <- Minus
X 15162555..15162662 1..108 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:16:02 Download gff for UFO06407.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15056588..15056695 1..108 97   Minus
arm_X 15039931..15040487 499..1052 97 <- Minus
arm_X 15042102..15042314 286..498 100 <- Minus
arm_X 15044725..15044901 109..285 100 <- Minus