UFO06408.5prime Sequence
1137 bp (1016 high quality bases) assembled on 2009-08-18
> UFO06408.5prime
CAGTCGACATGAGCAGGGGTCGCGGAAAGGTCAGGGATTCAGCAAGCCAT
TCCGGCTCCCACTCCGCATCCAAATCGGCCATGGACCCGCCGCGCTGCTC
CATCTGCGGCACTCAGCAGCAACTACTGCGCTGCGCCAAGTGCAAGGCCG
TCTACTACTGCTCCCCCGCCCACCAGCATCTCCATTGGCCCGACCACCGC
ACCGAGTGCCGCCTCCTGACCCGCCAAAAGCTCAACAGCAGCAACAACAA
TAAGCAGCAGCAGCGGCAGCAGATCCAGCAACTGCAACAAGCTGTGGCAT
CTGCCAATCTGGAATGCAGCGGCGCCGGCGCCAACTGCTCCACCGCCCAG
ATGATGACGCCTGCCCACCAGGCGCAGAGTTGGCCCGCCGAGGTAGACAA
CCTGCTGAATCTCCTCGGGCAGCCGGGCAGCCAGGAGAAGGCTGCAGCTG
CGGAAACGGAAACAGGTCAAAGGCAGCAGCAGCACCAGCATCATCACCAT
AATGGCGAAAAGAGCTCCAGCTATCAAATCGGTCTGGCGGATGCCAGCTT
CATGGGATCAGGAAGTGAGCGCCGCTATGAGGATCTGTGCCGTAACATCA
TCAGCGACATGAACCAGTATGGTCTGTCCGTGGTGGACGACTTCCTGGGG
ATGGAGACGGGCCTGAAGATCCTCAACGAGGTTCGAAGCATGTACAACGC
AGGAGCCTTCCAGGATGGCCAAGTGGTGACCAACCAGACGCCCGATGCAC
CCGCGGTGCGCGGTGACAAGATCCGAGGCGATAAGATCAAGTGGGTTGGT
GGCAATGAGCCGGGCTGCAGCAATGTCTGGTATCTGACCAATCAGATTGA
CTCTGTGGTGTATCGTGTTAACACGATGAAAGGATAATGGCATCTTGGGC
AACTACCACATCACGGAGCGCACGAGGGCAATGGTCGCTTGTTTATCCGG
GATCGGGAACTCACTACGTCATGCATTGTGGACAATCCCAAAAAGGATGG
GCCGCGTTTAACCGCCCTATACTACTTGAATATCAACTGGGAATGCGCCG
GGAAAATGGCGGCATTCTGCGAATTCGGCCACCACCCGGAACACAGTGGC
GGATATGGAGCCAAGTTTGATCGACTGAAATTCTTCT
UFO06408.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hph-RD | 3171 | CG44015-RD | 529..1654 | 9..1137 | 5285 | 98.3 | Plus |
Hph-RC | 2496 | CG44015-RC | 529..1654 | 9..1137 | 5285 | 98.3 | Plus |
Hph-RA | 2337 | CG44015-RA | 699..1268 | 565..1137 | 2505 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5257565..5258121 | 9..565 | 2785 | 100 | Plus |
3R | 32079331 | 3R | 5266751..5267032 | 564..845 | 1410 | 100 | Plus |
3R | 32079331 | 3R | 5267117..5267202 | 842..928 | 370 | 97.7 | Plus |
3R | 32079331 | 3R | 5267262..5267402 | 927..1071 | 360 | 89.7 | Plus |
3R | 32079331 | 3R | 5267461..5267529 | 1071..1137 | 185 | 91.3 | Plus |
Blast to na_te.dros performed 2014-11-28 19:56:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2409..2662 | 233..502 | 141 | 56.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2377 | 445..502 | 132 | 72.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2380 | 442..499 | 132 | 72.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2296..2352 | 463..521 | 110 | 67.8 | Plus |
UFO06408.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:52 Download gff for
UFO06408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RC | 525..1650 | 9..1137 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:56:10 Download gff for
UFO06408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RC | 529..1654 | 9..1137 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:29 Download gff for
UFO06408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RC | 529..1654 | 9..1137 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:29 Download gff for
UFO06408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5257565..5258121 | 9..565 | 100 | -> | Plus |
3R | 5266753..5267032 | 566..845 | 100 | -> | Plus |
3R | 5267121..5267201 | 846..927 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:56:10 Download gff for
UFO06408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1083287..1083843 | 9..565 | 100 | -> | Plus |
arm_3R | 1092475..1092754 | 566..845 | 100 | -> | Plus |
arm_3R | 1092843..1092923 | 846..927 | 97 | -> | Plus |