Clone UFO06408 Report

Search the DGRC for UFO06408

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:64
Well:8
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptHph-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO06408.5prime Sequence

1137 bp (1016 high quality bases) assembled on 2009-08-18

> UFO06408.5prime
CAGTCGACATGAGCAGGGGTCGCGGAAAGGTCAGGGATTCAGCAAGCCAT
TCCGGCTCCCACTCCGCATCCAAATCGGCCATGGACCCGCCGCGCTGCTC
CATCTGCGGCACTCAGCAGCAACTACTGCGCTGCGCCAAGTGCAAGGCCG
TCTACTACTGCTCCCCCGCCCACCAGCATCTCCATTGGCCCGACCACCGC
ACCGAGTGCCGCCTCCTGACCCGCCAAAAGCTCAACAGCAGCAACAACAA
TAAGCAGCAGCAGCGGCAGCAGATCCAGCAACTGCAACAAGCTGTGGCAT
CTGCCAATCTGGAATGCAGCGGCGCCGGCGCCAACTGCTCCACCGCCCAG
ATGATGACGCCTGCCCACCAGGCGCAGAGTTGGCCCGCCGAGGTAGACAA
CCTGCTGAATCTCCTCGGGCAGCCGGGCAGCCAGGAGAAGGCTGCAGCTG
CGGAAACGGAAACAGGTCAAAGGCAGCAGCAGCACCAGCATCATCACCAT
AATGGCGAAAAGAGCTCCAGCTATCAAATCGGTCTGGCGGATGCCAGCTT
CATGGGATCAGGAAGTGAGCGCCGCTATGAGGATCTGTGCCGTAACATCA
TCAGCGACATGAACCAGTATGGTCTGTCCGTGGTGGACGACTTCCTGGGG
ATGGAGACGGGCCTGAAGATCCTCAACGAGGTTCGAAGCATGTACAACGC
AGGAGCCTTCCAGGATGGCCAAGTGGTGACCAACCAGACGCCCGATGCAC
CCGCGGTGCGCGGTGACAAGATCCGAGGCGATAAGATCAAGTGGGTTGGT
GGCAATGAGCCGGGCTGCAGCAATGTCTGGTATCTGACCAATCAGATTGA
CTCTGTGGTGTATCGTGTTAACACGATGAAAGGATAATGGCATCTTGGGC
AACTACCACATCACGGAGCGCACGAGGGCAATGGTCGCTTGTTTATCCGG
GATCGGGAACTCACTACGTCATGCATTGTGGACAATCCCAAAAAGGATGG
GCCGCGTTTAACCGCCCTATACTACTTGAATATCAACTGGGAATGCGCCG
GGAAAATGGCGGCATTCTGCGAATTCGGCCACCACCCGGAACACAGTGGC
GGATATGGAGCCAAGTTTGATCGACTGAAATTCTTCT

UFO06408.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:22
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-RD 3171 CG44015-RD 529..1654 9..1137 5285 98.3 Plus
Hph-RC 2496 CG44015-RC 529..1654 9..1137 5285 98.3 Plus
Hph-RA 2337 CG44015-RA 699..1268 565..1137 2505 96.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5257565..5258121 9..565 2785 100 Plus
3R 32079331 3R 5266751..5267032 564..845 1410 100 Plus
3R 32079331 3R 5267117..5267202 842..928 370 97.7 Plus
3R 32079331 3R 5267262..5267402 927..1071 360 89.7 Plus
3R 32079331 3R 5267461..5267529 1071..1137 185 91.3 Plus
Blast to na_te.dros performed 2014-11-28 19:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2409..2662 233..502 141 56.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2377 445..502 132 72.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2380 442..499 132 72.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2296..2352 463..521 110 67.8 Plus

UFO06408.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:52 Download gff for UFO06408.5prime
Subject Subject Range Query Range Percent Splice Strand
Hph-RC 525..1650 9..1137 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:56:10 Download gff for UFO06408.5prime
Subject Subject Range Query Range Percent Splice Strand
Hph-RC 529..1654 9..1137 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:29 Download gff for UFO06408.5prime
Subject Subject Range Query Range Percent Splice Strand
Hph-RC 529..1654 9..1137 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:29 Download gff for UFO06408.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5257565..5258121 9..565 100 -> Plus
3R 5266753..5267032 566..845 100 -> Plus
3R 5267121..5267201 846..927 97 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:56:10 Download gff for UFO06408.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1083287..1083843 9..565 100 -> Plus
arm_3R 1092475..1092754 566..845 100 -> Plus
arm_3R 1092843..1092923 846..927 97 -> Plus