UFO06409.5prime Sequence
1072 bp (972 high quality bases) assembled on 2009-08-18
> UFO06409.5prime
CAGTCGACATGCCGTCGACGCCGTACGATCTGGTCCAGGATGACCAGGAT
CTGCGGGTGCCGCTGCACGCCGAGCAGGCCTTCTTCCACGGCATCACATT
TCAGGCCAAGTTCGTTGGCTGGGAAGAGGTGCCACGACCGAACACTCGAG
CCGAGATTGTTCAGGCCATGCGACGCATAAGGTACGAGTGCAAAGTGCAG
AATCTGAAGAAGCGAAAGGTCACCATTCACATATCGGTAAATGGCGTGCG
CGTTGTGCTCAAAAAGCGCCGTCGAAAAAAAAAGAACTGGACCAATGACC
CCGAGGACATCGAGTTGCTCAATCATCCCATCTATAGAATATTCTACGTG
TCCCACGACAGCAGCGATCTCAAGATATTCAGCTACATAGCGCGCGATGC
CAGCACGGATACGTTCAAGTGTTCCGTCTTCAAAAGTCACAAAAAGTCTC
AGGCGATGCGCATCGTTCGCACCGTGGGACAAGCCTTTGAAGTGTGCCAC
AAATTTAATCTTCATAAGAATTCCCTGGAACCCAATGACGAACGCTCCGA
TATATCCTCATCGGAGCTGCTGGACGTGGAGCAGATCAGCGAGCAGCAGC
TATCCGAGGATGGTGAACGCGGTGGTGGCGACAACGAGACGCCCAAGAAA
GAGCACTTGGCCATAACGCCCGATCTGAACCACACGCAGCCGCAGCGGCC
GAACCACTTGGATATAATGCCATCGCATTCGAGTCTACGCAAATCGAACA
GCCTGCTGTGCGATGTGGACGACAAGTCGCCAGGCTCACCTTCCTCGCCG
CGCTCTGAGATCACTCAGCTGAAGGACCAGCTGGAGGCACAGGCTCTGCA
GACGCGCCAGGCTCTGGGTCAACTGATGCTGGTGCGGGAGCAGCTCATCT
CGGAGACCATGCGCGCATCGAGGCACAGCGCCGCACCCACATTGCTGCAG
CAGACCGCGAGCTCCTGAGCACCTGCCTCTTTGGGGGCCTACATGAGCAG
CAGACGCGACTCACGTCGCAACATCGGAATGCGCCCCCAGCATCGCAGCT
ACATGCTGCTGCAGGCCAGGCA
UFO06409.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42673-RB | 3618 | CG32048-RA | 792..1866 | 9..1068 | 4910 | 98.1 | Plus |
| CG42673-RD | 3582 | CG42673-RD | 792..1826 | 9..1031 | 4835 | 98.6 | Plus |
| CG42673-RC | 3902 | CG32048-RB | 1512..2150 | 445..1068 | 2730 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9588238..9588444 | 445..651 | 1020 | 99.5 | Plus |
| 3L | 28110227 | 3L | 9581546..9581713 | 279..446 | 840 | 100 | Plus |
| 3L | 28110227 | 3L | 9592085..9592256 | 758..928 | 810 | 99.4 | Plus |
| 3L | 28110227 | 3L | 9591239..9591347 | 650..758 | 545 | 100 | Plus |
| 3L | 28110227 | 3L | 9553435..9553536 | 9..110 | 510 | 100 | Plus |
| 3L | 28110227 | 3L | 9581390..9581486 | 182..278 | 485 | 100 | Plus |
| 3L | 28110227 | 3L | 9575649..9575722 | 109..182 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:05:57 has no hits.
UFO06409.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:52 Download gff for
UFO06409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32048-RA | 786..1867 | 1..1071 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:16:00 Download gff for
UFO06409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42673-RB | 786..1867 | 1..1071 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:49:52 Download gff for
UFO06409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42673-RB | 786..1867 | 1..1071 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:49:52 Download gff for
UFO06409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9553429..9553536 | 1..110 | 96 | -> | Plus |
| 3L | 9575651..9575722 | 111..182 | 100 | -> | Plus |
| 3L | 9581391..9581486 | 183..278 | 100 | -> | Plus |
| 3L | 9581546..9581713 | 279..446 | 100 | -> | Plus |
| 3L | 9588240..9588444 | 447..651 | 99 | -> | Plus |
| 3L | 9591241..9591347 | 652..758 | 100 | -> | Plus |
| 3L | 9592086..9592256 | 759..928 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:16:00 Download gff for
UFO06409.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9546529..9546636 | 1..110 | 96 | -> | Plus |
| arm_3L | 9568751..9568822 | 111..182 | 100 | -> | Plus |
| arm_3L | 9574491..9574586 | 183..278 | 100 | -> | Plus |
| arm_3L | 9574646..9574813 | 279..446 | 100 | -> | Plus |
| arm_3L | 9581340..9581544 | 447..651 | 99 | -> | Plus |
| arm_3L | 9584341..9584447 | 652..758 | 100 | -> | Plus |
| arm_3L | 9585186..9585356 | 759..928 | 99 | -> | Plus |
