UFO06410.5prime Sequence
1109 bp (999 high quality bases) assembled on 2009-08-18
> UFO06410.5prime
CAGTCGACATGTCGCGCAGAAAGGAGAACGAGGAGGTGGACAAGCAGACG
CGTATTGCCATCGTCAGCGATGACAAGTGCAAGCCCAAACGGTGTCGGCA
GGAGTGCAAGAAGACCTGCCCAGTGGTGCGCATGGGCAAGCTCTGCATCG
AGGTGACGCCCACGTCCAAGATAGCCTCGTTGTCCGAGGAGCTGTGCATC
GGTTGCGGTATTTGCGTCAAGAAATGCCCCTTCGAGGCCATCACAATCAT
CAACTTGCCCAGCAATCTGGAGAAGCACACAACGCATCGATACAGCAAGA
ACTCCTTCAAGCTGCATCGTCTGCCCATTCCGCGTCCCGGTGAAGTGCTC
GGTCTTGTGGGACAGAACGGTATTGGCAAGTCGACCGCTTTGAAGATCCT
CGCGGGGAAACAAAAGCCGAACCTGGGGAAGTACGCCAATCCGCCCGACT
GGACGGAGATCCTTAGCTACTTCCGCGGCTCCGAGCTGCAGAACTACTTC
ACCAAGATCTTGGAGGACAATCTGAAGGCGCTGGTCAAGCCGCAGTATGT
GGATCAGATCCCCAAGGCGGTGCGTGGCGCTGTGGGCGATCTTCTGGATA
AGAAGGACGAGAGGGAGCTGCAGACTAAGATTTGTGAAATGCTGGATCTA
TCGCACATCCGTGATCGTGAGATCGCTCAGCTTTCTGGCGGAGAACTGCA
ACGCTTTGCCATCGCCATGGTATGCATACAGAATGCAGACATCTTCATGT
TCGACGAGCCGTCCTCGTATTTGGATGTTAAGCAGCGTCTGAACGCTGCC
TTGACCATTCGATCACTCCTGCATCCCACCAAGTTTATTATTGTGGTGGA
GCACGATTTGTCTGTGCTGGATTACTTGTCTGACTTTATATGCTGCCTTT
ACGAGTTCCCGGCTGCTACGGGTGGTTACTTTGCCTTTCTCTGTGCGCGA
AGGCATCACATTTTCCTCGATGGGTTTGTGGCCACCGAAAACATGCCGAT
TCCGCACTGGAGTCACTTACTTTCAAGTATCTGATCCGCTACGGAGGAGG
GAGATCAAGGCGCATGATCACTACGTATTCCGCATGTCAGACTGGCAAGT
CAGTTGACG
UFO06410.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pix-RB | 2184 | CG5651-RB | 71..1143 | 8..1078 | 5075 | 98.7 | Plus |
| pix-RA | 2223 | CG5651-RA | 110..1182 | 8..1078 | 5075 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8973459..8974073 | 834..220 | 3075 | 100 | Minus |
| 3L | 28110227 | 3L | 8974134..8974347 | 221..8 | 1070 | 100 | Minus |
| 3L | 28110227 | 3L | 8973181..8973401 | 1050..833 | 720 | 95.5 | Minus |
Blast to na_te.dros performed 2014-11-28 20:45:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\INE-1 | 1467 | Dbuz\INE-1 ISBU1 1467bp | 781..867 | 299..211 | 115 | 61.8 | Minus |
UFO06410.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:30:00 Download gff for
UFO06410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pix-RB | 65..1154 | 1..1086 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:00 Download gff for
UFO06410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pix-RA | 99..1193 | 1..1086 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:03 Download gff for
UFO06410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pix-RA | 99..1193 | 1..1086 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:03 Download gff for
UFO06410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8973143..8973401 | 833..1086 | 93 | <- | Minus |
| 3L | 8973461..8974071 | 222..832 | 100 | <- | Minus |
| 3L | 8974134..8974350 | 1..221 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:00 Download gff for
UFO06410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8966243..8966501 | 833..1086 | 93 | <- | Minus |
| arm_3L | 8966561..8967171 | 222..832 | 100 | <- | Minus |
| arm_3L | 8967234..8967450 | 1..221 | 98 | | Minus |
