UFO06411.5prime Sequence
1082 bp (990 high quality bases) assembled on 2009-08-18
> UFO06411.5prime
CAGTCGACATGGATATCTCCGCCTACCAGCACATGAACATCCGGATGAGC
ACGCGCGGCAAGCGTCCTCTGAGGAACCTCACGCCCAACGACAAGGTGCG
TGCCATCCAGCGCATCCACAATGGTGAAACCAAGGCGAGTGTGTCGCGGG
ACATCGGAGTGCCGGAGTCCACGCTGCGTGGCTGGTGCAAGAACGAGCAG
AAGCTGCGCTTCATGTGCCGCCAGCTGGGCCCCGATCACCTGGGTCTCGA
CACGCCACCGGAAAAGCGCGCCAAGTTCGAGCTGCAGCTCCAGCTGCCAC
CGAAGTTCGTGGCACTGCCTCCAAACTACGAGGAGCTGGGCTTCGGTGCA
CTGCCCTACAGTCCAGCCGATTACCCAGTGCAAAATGAATCCCTGCTGGA
GAAGCTTAGCCTTGTGGAATTTGTAAAAAAGAACGGTGGATTGCATCCGG
AGGGTGCACTGCATCCGGGTCAGGCCGGCGTGATGGACTACTCCAACAAC
ATGCTGCACCAGCTGAATCTTCTGGCCCTGCTCAACTCCAAACTCACCCC
ACAGACTGCCGATGTCCTGGTAGATGCACAGCCGAAATCAGAGGACAACA
AAGTGATTGATTCGCCCGCTGCTTCCGAGGATTACAGCAAAAACAATTAC
CCCTTGCTGAGTGTTAAGAACTGGGCCAAGGATCCGGCCAAGCGGGTGAA
CTCCGCCAATCAGCCGGAGCAAGTGAACGATAAGAACAACAATGCCCTGG
AGGCCAACAGTTCCGCACCACAAGCTCTTGTCACGGAGCAGCGAAGACTC
CCATGTTCTCGGACACCACAATGCCCCTACTGCCAGCACCCTTCCCGAAT
CCTGCGGATCTAGCGCCTGTGATAGCACCAGTGACTCCGGCAAACGCCCC
GCCCACTGCAACGATACAGGGAGCGGCTCTGCTCGACTGTGCAGCTCTCA
TGCAGTTTGACTCCTGCTCGCTGCGCGCAGCTCATGCAGCCCGCCGCGAG
ACAGTGACCAGCTACATCCCAACGATGCAGCGCGATCGGGCGATTCGAAC
AATCCTCACGAGGGCTACTAGCACTGATCCAT
UFO06411.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| danr-RA | 1832 | CG13651-RA | 161..1164 | 8..993 | 4585 | 98.1 | Plus |
| dan-RC | 3968 | CG11849-RC | 1078..1292 | 10..224 | 475 | 81.4 | Plus |
| dan-RB | 3340 | CG11849-RB | 450..664 | 10..224 | 475 | 81.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25138232..25139167 | 8..939 | 4500 | 99.5 | Plus |
| 3R | 32079331 | 3R | 25189916..25190130 | 10..224 | 475 | 81.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:03:55 has no hits.
UFO06411.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:59 Download gff for
UFO06411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| danr-RA | 156..1117 | 8..960 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:01:02 Download gff for
UFO06411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| danr-RA | 156..1117 | 8..960 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:10 Download gff for
UFO06411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| danr-RA | 161..1122 | 8..960 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:10 Download gff for
UFO06411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25138232..25139194 | 8..960 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:01:02 Download gff for
UFO06411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20963954..20964916 | 8..960 | 98 | <- | Plus |
