UFO06413.5prime Sequence
1088 bp (982 high quality bases) assembled on 2009-08-18
> UFO06413.5prime
CAGTCGACATGACGGCCAACACAGGGACGTCGGGTGAAAATCTGATGGGA
AATGGTGGAAAGACGCATGAACCCTCCACGCCCACTTCGGATACGGAAGT
GGCCAGCGGCACGCCAACGGAACTGAGCGAAATCTTCTTCGTGGACAATA
GCCGGCGCAAGCAGAGCATCAAAATCCAGGTGAAACTATGCCCGGAAGGC
GTTTACCTGCGACGCGAAACCGAGGAAGATGATCACATCAATGAGCAGCT
GATCAGGATCGATGATATCATAGGATCACGCTACGGACGGCGTTTGAAGA
AACGAGCCCGAGGCGGTCTAAACTCCTGCCGCAATCCAAATGTTCCGGGC
CAGGAGGCGGATTCGGAACCGGATAGCGATAATAGCGCCTATTTGTACAT
CTATGCATATTTGAAGAAGGAGAAACCGTTGCGACGTGTCCAAACGCTCC
GGATTCTACGCTTTCGTTCGAGCAATGACTACGGAGTGAATCTACAGACC
GCCGAGATGTGGCATCATACGATTCGAAAGCACAAGCGTGGCAATGGCAG
CAGTTCGCCCGCCGATTGTGGCAAACAGTTGCTCATCCTACTGAATCCGA
AATCCGGTTCGGGCAAAGGGCGTGAGCTCTTCCAGAAACAGGTGGCACCT
TTGCTGACGGAAGCAGAGGTGCAATACGATCTCCAGATCACCACACATCC
GCAGTATGCCAAGGAGTTCGTGCGGACCAGAAGGGATCTGCTGACACGCT
ATTCGGGCATTGTGGTTGCCTCCGGCGATGGTCTATTCTACGAAGTGCTC
AATGGGCTAATGGAACGCATGGATTGCGCCGAGCCTGCAGGAGCTACCGC
TTGGCATTATACCATGTGGTTCCGGAATGGTCTGGCCAAAAGTGTGGCCC
ATCATTGCAATGAACGTACGAACCGAAGCCCATTCTCCACGCCACCTTGA
CCTGCATGGCGGCAAAAGTACACCCATGATGTGTCAGAGTGGAGCTGCGA
CGCGGGACAGGCACTTTGTGATGTACTCTCTGTCGTGGCTTGGGATCTGA
TGCGACTCGAATATAAGAGAGCGAGCAATGAATCGATT
UFO06413.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sk1-RA | 2680 | CG1747-RA | 303..1397 | 9..1088 | 4945 | 97.8 | Plus |
| Sk1-RB | 2616 | CG1747-RB | 237..1331 | 9..1088 | 4945 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11443633..11444660 | 9..1028 | 4725 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:36:14 has no hits.
UFO06413.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:49 Download gff for
UFO06413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk1-RA | 87..1129 | 1..1037 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:53 Download gff for
UFO06413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk1-RB | 229..1271 | 1..1037 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:24 Download gff for
UFO06413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sk1-RB | 229..1271 | 1..1037 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:24 Download gff for
UFO06413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11443625..11444667 | 1..1037 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:53 Download gff for
UFO06413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11337658..11338700 | 1..1037 | 98 | | Plus |
