UFO06414.5prime Sequence
1127 bp (1013 high quality bases) assembled on 2009-08-18
> UFO06414.5prime
CAGTCGACATGGAGGAACTACGCAAGCATTTATCCAAGGTGAACGTGCCA
TGCGCATCCGGGGCGGGCAGTCCTCCCATCTACAAGGACGAGTGCGTCTA
CTCCTATGACAATCCCGAGACGCCCACCGGTTTGTACGTGTGCCTGCACA
GCTTTTTGGGCTTCGGCGAGGCGTATGTGCGGGAGTATGCCGACAAGACC
GGCAACCGGGTCTTCCTCCACATCCAGCGGGTGAAGACGATCAAGGAGGG
CGCCGACATGGAGGCCGAATGCGCGGAGTCGGAGGCAGGACCGGAACGGA
AGATCACCCGCCTGGCCATTGGCGTCGAGGGCGGCTACAACGAGTCGGAC
ATGGCCAAGAAGTACGAGATCAAGGACACGTACAGCATCGTGGTGGCTCC
GCACCTGGATAAGAAGCTGCCCTATCCGGATCCAGAGCTGCCCATGCGTG
TCACCCAGTCGGTGGAAGCGATCCTGGCCGCCGACTCGGCAATTGCCAAG
TTGGAGAAGGCCACGCTGATGGGCACCTGGGATGGTGAAGTGCGTCAGGC
GTCGAAGTACGCAGATAACCTGCAGCAGCTGGATAATGGCAAGAGGATTC
CCCCATCCGGCTGGCAGTGCGAGAAGTGCGACTTGACCAACAACCTCTGG
CTTAATCTGACCGATGGTTCGATCATGTGCGGACGCAAGTTCTTTGACGG
CAGTGGCGGCAACGATCACGCCGTGGAGCACTACAGAGTAACGGGTTTCC
CGCTGGCGGTGAAACTGGGCACCATCACCGCTGATGGCAAGTCGGATGTG
TTCTCCTACCCGGAGGATGAAATGGTACTCGATCCACACTTAGAGCGCCA
TCTCTCCCACTTTGGCATCAACATGGCGGCGATGAAGAAGAGCGAGAGTC
GATGGTGGAGCTAGAGTTGGACATTAACCAGCGCATCGGCGAGTGACGCG
CTTACGAGAGCGAAAGTGAGCTGCAGCCTGTGCTGTCCTGCATACACTGG
CATGCGCAATCTGGGCACTCCTGCTACATAAAACAGCGTGATGCAGTGCT
CTCGTCATCCAGAACTTCAGCAGCATCGGTGGGCACTGGACGACGCTATT
CAGAACTTTCCCACGACGCCACGACTC
UFO06414.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12082-RB | 2706 | CG12082-RB | 127..1218 | 9..1090 | 5060 | 98.4 | Plus |
| CG12082-RA | 2779 | CG12082-RA | 200..1291 | 9..1090 | 5060 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3147531..3148045 | 523..9 | 2575 | 100 | Minus |
| 3L | 28110227 | 3L | 3146942..3147471 | 1045..522 | 2245 | 97.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:22:56 has no hits.
UFO06414.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:48 Download gff for
UFO06414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12082-RA | 196..1309 | 5..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:59 Download gff for
UFO06414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12082-RA | 196..1309 | 5..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:59:37 Download gff for
UFO06414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12082-RA | 196..1309 | 5..1105 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:59:37 Download gff for
UFO06414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3146875..3147470 | 523..1105 | 96 | <- | Minus |
| 3L | 3147532..3148049 | 5..522 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:59 Download gff for
UFO06414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3147532..3148049 | 5..522 | 99 | | Minus |
| arm_3L | 3146875..3147470 | 523..1105 | 96 | <- | Minus |
