UFO06417.5prime Sequence
1068 bp (920 high quality bases) assembled on 2009-08-18
> UFO06417.5prime
CAGTCGACATGACCGCCCGCAATCCTCAGACACTGATGGCACTGCCAAAC
GAGGAACACTTCGACTTCCTGTTCAAGATCGTCCTCATTGGTGACTGCGG
GACGGGGAAGACCTGCATAGTGGACAGATTTAAGACAGGGAACTACATAG
AGCGACATGGGAACACCATCGGAGTGGACTTTTCGATGAATACCATCGCC
GTGGAGGGCAAACAAATCAAGCTACAAATCTGGGACACTGCTGGTCAGGA
GAGGTTTCGCACTATTACGCAAAGCTATTATCGCTCGGCCAACGGGGTCT
TAATTGTTTACAACATCACCAAGCGGTCTTCCTTTTCCAATCTGCAAAAA
TGGATCGAAGAAGTGCGTAGATACGCTGCTTCTAATGTTTTGATAATCCT
CGTGGGCAACAAGTGCGATTTGGAGGAGCAGCGCGAGGTGGACTTTGAAG
AGGCGCGCCAGATGTGTCAATATATACCTGAGATCCTGTTCGTGATGGAG
ACCTCCGCCAAGGAGAACATGAACGTGGAGGACGCCTTCCGCTGCCTGGC
CAACGAACTTAAACGCCAACACGATGCCAACAATGTGGAGGAGGTGCCAG
AAAACACCATCACCTTGGGCCAGGGAAAGCCTTTAAAGAGTTGCAGCAGC
TCATGCAATCTCACCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGC
CCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACT
AGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAA
AACGCCCGGCGGCAACCGAGCGTTCTGAACAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCTGCACTCATCGCAGTACTGTGTAATTCATTATGCATTCTG
CGACATGCAGCATCACAAACGCATGATGAGCTGAATCGCCAGCGGCATCA
GCGCTGTCGCTGCGATATATTGCCATGGTGAAACGGGGCGAAAAGTGTCT
ACTGTCGTCAATCAGACT
UFO06417.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab19-RB | 1062 | CG7062-RB | 121..777 | 9..665 | 3225 | 99.4 | Plus |
| Rab19-RA | 1033 | CG7062-RA | 92..748 | 9..665 | 3225 | 99.4 | Plus |
| Rab30-RD | 1305 | CG9100-RD | 548..673 | 164..289 | 225 | 78.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8297814..8298071 | 306..563 | 1260 | 99.2 | Plus |
| 3L | 28110227 | 3L | 8297260..8297472 | 9..221 | 1050 | 99.5 | Plus |
| 3L | 28110227 | 3L | 8298120..8298221 | 564..665 | 510 | 100 | Plus |
| 3L | 28110227 | 3L | 8297533..8297619 | 220..306 | 420 | 98.9 | Plus |
| 2L | 23513712 | 2L | 7031867..7031992 | 289..164 | 225 | 78.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:44:24 has no hits.
UFO06417.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:47 Download gff for
UFO06417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab-RP3-RA | 89..745 | 9..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:47 Download gff for
UFO06417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab19-RA | 92..748 | 9..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:16:38 Download gff for
UFO06417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab19-RA | 92..748 | 9..665 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:16:38 Download gff for
UFO06417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8297535..8297619 | 222..306 | 98 | -> | Plus |
| 3L | 8297815..8298071 | 307..563 | 99 | -> | Plus |
| 3L | 8298120..8298221 | 564..665 | 100 | == | Plus |
| 3L | 8297260..8297472 | 9..221 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:47 Download gff for
UFO06417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8290360..8290572 | 9..221 | 99 | -> | Plus |
| arm_3L | 8290635..8290719 | 222..306 | 98 | -> | Plus |
| arm_3L | 8290915..8291171 | 307..563 | 99 | -> | Plus |
| arm_3L | 8291220..8291321 | 564..665 | 100 | == | Plus |
