UFO06418.5prime Sequence
1121 bp (1031 high quality bases) assembled on 2009-08-18
> UFO06418.5prime
CAGTCGACATGCTGCGCTACCTGCTCATTCTTTGCGCCCTCGGAAGCGCT
ACTTGCGGCGATGTTGAGCTACTAACTCAAACTGTCTATGGCTTCCTGGA
CTTCACAACCACGATTGGGAATACCGTCATGGTGTTCTCACCCCAAAGTT
CTCCAGCCTTTGAACTTAAATCCAACGACACGCACGAAATAATAAATATT
ATAGAGACTAAGCCGAAAGTGACGAAGAAGGAAAAGGAGAATGTCGGCAT
CAAGCCAACGCCTTTGATCGTGACTCACTCGAATGAAATTCCCGAAACCG
AGACATCCCAGATTGAATCTTACAACATAAGTCTCTCCAACTCGCCCATC
CAAACGCTTTTGAATACCCCCGAATACGATCTGCTCTCCCGCCAGCCCGA
GCAGTTTGCCGAAGAAACCTATCGCCTGGTCAACTTCAAGTCCAAGAGCG
AGGCTGATCGCCAAAGGATATACCCGTCCAAGAAGGAGCCCGTACATGGC
TACCAGGCTACGAGATCCACTGAATTCAGGAGCATTGTGACGGCAACCAA
GGACTCTGGTAAATTCTCCAAGGTCTCCCAGGTTCACGCAGTCTCCAGTG
TGGAGAAGAAGAGCAAGCCCCGGCAGTCGCGGACCAACAAACCAGTTACG
CCCTCGATCCAGCCGAGCAGGACTCTGAAGGAGTCCTCTATCCAGACCCA
ACTAGCCAGCAAGCCACCAAGGAAGAGCCACCAAAGTGGTCGCGACAACC
GAGGATCGTCGGGCACCAGAAAGCCTTCGCGTCCCAAGGGAAAGCGGAGG
AACAAACACACCCAGAGTTCCAAGCCGACAGTAGCTCCATCAGCAACTGA
AACTACCTCCCGCCACTCGTATCGGTCGAAAGCAAATGCGAATGCTGTGC
AGGAGGAGCCAGTGTCCGTCGTGAGTCCCAATGCATTCAAGCTCAACAGC
GTCCTGCAGATGGCAGTACAAGTCCTCCGCCGAAGCCCAAGGTGAACATA
GGAAGAACGCAACCCCAATCTGGCCCACCACCGTCAAACGACACGGCTCC
CAGTGATAAGATTCCGTGAAATCATCACCACCAGCATAACACGGCAGATC
TTGAGGCGTCGATCACGAACG
UFO06418.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16786-RC | 2931 | CG16786-RC | 307..1435 | 9..1121 | 5140 | 98 | Plus |
CG16786-RA | 2800 | CG16786-RA | 307..1435 | 9..1121 | 5140 | 98 | Plus |
CG16786-RB | 2815 | CG16786-RB | 322..1450 | 9..1121 | 5140 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24083651..24084286 | 162..797 | 3180 | 100 | Plus |
2R | 25286936 | 2R | 24084338..24084608 | 796..1062 | 975 | 94.9 | Plus |
2R | 25286936 | 2R | 24083470..24083584 | 48..162 | 575 | 100 | Plus |
2R | 25286936 | 2R | 24083030..24083069 | 9..48 | 200 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:55:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 6046..6118 | 159..229 | 116 | 67.6 | Plus |
UFO06418.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:47 Download gff for
UFO06418.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16786-RA | 357..1485 | 9..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:44 Download gff for
UFO06418.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16786-RB | 322..1450 | 9..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:07 Download gff for
UFO06418.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16786-RB | 322..1450 | 9..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:07 Download gff for
UFO06418.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24083030..24083069 | 9..48 | 100 | -> | Plus |
2R | 24083471..24083584 | 49..162 | 100 | -> | Plus |
2R | 24083652..24084285 | 163..796 | 100 | -> | Plus |
2R | 24084339..24084679 | 797..1121 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:44 Download gff for
UFO06418.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19970553..19970592 | 9..48 | 100 | -> | Plus |
arm_2R | 19970994..19971107 | 49..162 | 100 | -> | Plus |
arm_2R | 19971175..19971808 | 163..796 | 100 | -> | Plus |
arm_2R | 19971862..19972202 | 797..1121 | 93 | | Plus |