Clone UFO06418 Report

Search the DGRC for UFO06418

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:64
Well:18
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG16786-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO06418.5prime Sequence

1121 bp (1031 high quality bases) assembled on 2009-08-18

> UFO06418.5prime
CAGTCGACATGCTGCGCTACCTGCTCATTCTTTGCGCCCTCGGAAGCGCT
ACTTGCGGCGATGTTGAGCTACTAACTCAAACTGTCTATGGCTTCCTGGA
CTTCACAACCACGATTGGGAATACCGTCATGGTGTTCTCACCCCAAAGTT
CTCCAGCCTTTGAACTTAAATCCAACGACACGCACGAAATAATAAATATT
ATAGAGACTAAGCCGAAAGTGACGAAGAAGGAAAAGGAGAATGTCGGCAT
CAAGCCAACGCCTTTGATCGTGACTCACTCGAATGAAATTCCCGAAACCG
AGACATCCCAGATTGAATCTTACAACATAAGTCTCTCCAACTCGCCCATC
CAAACGCTTTTGAATACCCCCGAATACGATCTGCTCTCCCGCCAGCCCGA
GCAGTTTGCCGAAGAAACCTATCGCCTGGTCAACTTCAAGTCCAAGAGCG
AGGCTGATCGCCAAAGGATATACCCGTCCAAGAAGGAGCCCGTACATGGC
TACCAGGCTACGAGATCCACTGAATTCAGGAGCATTGTGACGGCAACCAA
GGACTCTGGTAAATTCTCCAAGGTCTCCCAGGTTCACGCAGTCTCCAGTG
TGGAGAAGAAGAGCAAGCCCCGGCAGTCGCGGACCAACAAACCAGTTACG
CCCTCGATCCAGCCGAGCAGGACTCTGAAGGAGTCCTCTATCCAGACCCA
ACTAGCCAGCAAGCCACCAAGGAAGAGCCACCAAAGTGGTCGCGACAACC
GAGGATCGTCGGGCACCAGAAAGCCTTCGCGTCCCAAGGGAAAGCGGAGG
AACAAACACACCCAGAGTTCCAAGCCGACAGTAGCTCCATCAGCAACTGA
AACTACCTCCCGCCACTCGTATCGGTCGAAAGCAAATGCGAATGCTGTGC
AGGAGGAGCCAGTGTCCGTCGTGAGTCCCAATGCATTCAAGCTCAACAGC
GTCCTGCAGATGGCAGTACAAGTCCTCCGCCGAAGCCCAAGGTGAACATA
GGAAGAACGCAACCCCAATCTGGCCCACCACCGTCAAACGACACGGCTCC
CAGTGATAAGATTCCGTGAAATCATCACCACCAGCATAACACGGCAGATC
TTGAGGCGTCGATCACGAACG

UFO06418.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG16786-RC 2931 CG16786-RC 307..1435 9..1121 5140 98 Plus
CG16786-RA 2800 CG16786-RA 307..1435 9..1121 5140 98 Plus
CG16786-RB 2815 CG16786-RB 322..1450 9..1121 5140 98 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24083651..24084286 162..797 3180 100 Plus
2R 25286936 2R 24084338..24084608 796..1062 975 94.9 Plus
2R 25286936 2R 24083470..24083584 48..162 575 100 Plus
2R 25286936 2R 24083030..24083069 9..48 200 100 Plus
Blast to na_te.dros performed 2014-11-28 19:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 6046..6118 159..229 116 67.6 Plus

UFO06418.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:47 Download gff for UFO06418.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16786-RA 357..1485 9..1121 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:44 Download gff for UFO06418.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16786-RB 322..1450 9..1121 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:07 Download gff for UFO06418.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16786-RB 322..1450 9..1121 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:07 Download gff for UFO06418.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24083030..24083069 9..48 100 -> Plus
2R 24083471..24083584 49..162 100 -> Plus
2R 24083652..24084285 163..796 100 -> Plus
2R 24084339..24084679 797..1121 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:44 Download gff for UFO06418.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19970553..19970592 9..48 100 -> Plus
arm_2R 19970994..19971107 49..162 100 -> Plus
arm_2R 19971175..19971808 163..796 100 -> Plus
arm_2R 19971862..19972202 797..1121 93   Plus