UFO06419.5prime Sequence
1101 bp (1003 high quality bases) assembled on 2009-08-18
> UFO06419.5prime
CAGTCGACATGCCAGCCATTGGAATCGATTTGGGCACCACATACTCCTGC
GTGGGAGTCTTCCAGTACGGAAAAGTGGAGATCATTGCCAACGACCAGGG
TAACCGTACCACACCATCGTACGTGGCCTTCACCGACTCGGAACGCCTTA
TTGGAGATGCCGCCAAGAACCAGGTGGCCATGAACCCCAAGAACTCTGTG
TTCGATGCCAAACGCCTGATTGGGCGTCGTTTCGACGATTCCAAGATCCA
GGAGGACATTAAGCACTGGCCGTTCAAAGTGATCAACGACAACGGCAAAC
CAAAGATAAGCGTGGAGTTCAAGGGCGCGAATAAGTGCTTCTCTCCCGAG
GAGATTAGCTCGATGGTACTCACCAAAATGAAGGAGACTGCAGAAGCCTA
CCTGGGCACTACAGTGAAGGACGCTGTCATCACAGTGCCGGCCTACTTCA
ACGACTCCCAGCGCCAGGCAACAAAGGATGCTGGTGCCATCGCTGGCATC
AATGTGCTCCGCATCATCAACGAGCCAACAGCGGCGGCTCTGGCCTACGG
CCTGGACAAGAATCTGAAGGGAGAGCGCAATGTGCTGATTTTCGATTTGG
GCGGTGGTACTTTTGACGTCTCCATCTTGACCATTGACGAGGGATCCCTG
TTTGAGGTGCGCTCGACTGCGGGAGACACACATCTGGGTGGCGAGGACTT
CGACAACCGATTGGTTAACCACTTTGCCGAGGAGTTTAAGCGCAAGTACA
AAAAGGATCTGCGCTCCAACCCACGCGCACTGCGTCGTCTTCGCACGGCA
GCCGAGCGCGCAAAGCGCACCCTTTCCTCCAGCACGGAGGCTTCTTTGGA
GATTGACGCCCTGTACGAGGGACACGACTTCTACTCGAAGTGAGCCGCGC
CAGATTCGAGGACTTTGCGGTGACCTCTTCGCACACACTGGAGCAGTGAG
AGCACTCAGACGCTAAATGGACAGAGCCAGATCCATGACTAGTCCTGGTG
GAGGCTCCCACTCGTATCCCAGTAGACTGCTGCAGACTTCTTCCGCGAAA
GACCTGACTTGTCATCATCGGACGAGGCCGGTGCTACGGAGCAGCCTCCA
A
UFO06419.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp68-RA | 2231 | CG5436-RA | 207..1322 | 9..1096 | 4835 | 97 | Plus |
| Hsp70Ab-RA | 2375 | CG18743-RA | 255..1178 | 9..930 | 1915 | 80.9 | Plus |
| Hsp70Aa-RA | 2382 | CG31366-RA | 256..1179 | 9..930 | 1915 | 80.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24056181..24057104 | 930..9 | 4520 | 99.8 | Minus |
| 3R | 32079331 | 3R | 11955385..11956289 | 912..9 | 1865 | 80.7 | Minus |
| 3R | 32079331 | 3R | 11958789..11959693 | 9..912 | 1865 | 80.7 | Plus |
| 3R | 32079331 | 3R | 12502752..12503656 | 9..912 | 1805 | 80.2 | Plus |
| 3R | 32079331 | 3R | 12506035..12506939 | 9..912 | 1805 | 80.2 | Plus |
| 3R | 32079331 | 3R | 12509318..12510222 | 9..912 | 1805 | 80.2 | Plus |
| 3R | 32079331 | 3R | 12466653..12467557 | 912..9 | 1790 | 80.1 | Minus |
| 3R | 32079331 | 3R | 15244379..15245241 | 19..884 | 1250 | 76.6 | Plus |
| 3R | 32079331 | 3R | 13045581..13046162 | 170..751 | 960 | 77.7 | Plus |
| 3L | 28110227 | 3L | 13975916..13976470 | 204..761 | 655 | 74.9 | Plus |
| 3R | 32079331 | 3R | 13044970..13045131 | 15..176 | 375 | 82.1 | Plus |
| 2R | 25286936 | 2R | 14254844..14255025 | 559..378 | 370 | 80.2 | Minus |
| 3L | 28110227 | 3L | 13974583..13974765 | 12..194 | 345 | 79.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:03:45 has no hits.
UFO06419.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:46 Download gff for
UFO06419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp68-RA | 196..1323 | 1..1099 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:00:55 Download gff for
UFO06419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp68-RA | 199..1326 | 1..1099 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:05 Download gff for
UFO06419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp68-RA | 199..1326 | 1..1099 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:05 Download gff for
UFO06419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24055985..24057111 | 1..1099 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:00:55 Download gff for
UFO06419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19881707..19882833 | 1..1099 | 96 | | Minus |
