UFO06421.5prime Sequence
1118 bp (1015 high quality bases) assembled on 2009-08-18
> UFO06421.5prime
CAGTCGACATGGAGGACGAGTGGGGCTCCTTTGATCGTCTGCCCAGTGTT
CCGAGTGCCTCGATGGATTTGGAGACGGAAAACGAGGTGGTCAGCAATTG
GTCCACACTGGCCAACTTCACGCGACTTGTGGCTGGTGCCGCTCCTGAAA
TCGTCAACTATACGCTCAACATGATCGACGTGGGTGTGGGCATGGCCACG
GATATATCCAATTTGAGCGTGAGCACCACGCCCCTGCCCGCCTACGCAAT
CTCCAATAGCTCCTCACTGGCGCACACCAATAGTCGCCATGAAGCACCAC
CGATGGCGGAACAGGTTCCGGAGCACGTGATGGATCACGCACCTCAACTA
TCCCGATCCGGGTTGCTGAAAGTGTATGTCCTGGCGGTAATGGCACTGTT
CTCTCTGCTGGGCAACCTGCTGACCATCTGGAATATCTACAAAACCCGCA
TCTCAAGAAGAAACTCACGGCACACGTGGAGTGCTATCTACTCACTGATG
TTCCATCTGTCCATCGCCGATGTCCTGGTCACCTGGTTCTGCATTATCGG
GGAGGCCGCGTGGTGCTACACCGTCCAGTGGCTGGCCAATGAGCTCACCT
GCAAGCTGGTGAAGCTCTTCCAGATGTTTAGCCTCTACCTGAGCACCTAT
GTCCTGGTCCTCATCGGAGTGGACCGCTGGATAGCGGTCAAGTATCCGAT
GAAGTCGCTCAACATGGCCAAGAGGTGTCATAGGCTACTTGGCGGTACTT
ACATCCTGTCGCTGGTGCTCAGCTTGCCACAGTTCTTCATCTTCCATGTA
GCGCGTGGCCCCATTCGTGGAGGAGTTTTACCAGTGCGTCACCCACGGAT
TCTACACGGCGGATTGGCAGGAGCAGATGTACGCCACCTTCACGCTGGTC
TTCACCTTCCTGCTGCGCTGTGCATCCTGTTTGGCACTACATGTCACTTC
GCACATTTCCAGCAGCGAAAGATGTCAGGATCAAGTGGCACTACTCACGC
AATGCCCACAAGACGATCGCAGAGCTGATACCAGCAGATGAGTCGCCTCG
CAATTCTGGTGATCATCAACGGTTCTCATCGCTGACGCTACTCGCCTAGA
GAGTATATGGTCAAGTTC
UFO06421.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CrzR-RB | 3238 | CG10698-RB | 536..1639 | 9..1080 | 4690 | 96.7 | Plus |
| CrzR-RA | 3238 | CG10698-RA | 536..1639 | 9..1080 | 4690 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12347194..12347967 | 782..9 | 3870 | 100 | Minus |
| 3L | 28110227 | 3L | 12342457..12342614 | 937..780 | 695 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:53:47 has no hits.
UFO06421.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:45 Download gff for
UFO06421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GRHRII-RA | 524..1498 | 1..970 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:17:48 Download gff for
UFO06421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CrzR-RA | 528..1502 | 1..970 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:10 Download gff for
UFO06421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CrzR-RA | 528..1502 | 1..970 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:10 Download gff for
UFO06421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12342457..12342611 | 783..937 | 98 | <- | Minus |
| 3L | 12347194..12347974 | 1..782 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:17:48 Download gff for
UFO06421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12335557..12335711 | 783..937 | 98 | <- | Minus |
| arm_3L | 12340294..12341074 | 1..782 | 99 | | Minus |
