UFO06426.5prime Sequence
1118 bp (1011 high quality bases) assembled on 2009-08-18
> UFO06426.5prime
CAGTCGACATGTCGCCTAAATATCATAATTTCGAGATTGCACTGGTCTAC
TTTCTGCTGCTAATACCATGGCCACCCACGAATGTGATCAGAATCCTCTG
CTCGCGAGATAACAGCCGACTGGTGCGCAAAATAGTGCGCTCCAAATGGA
CTCCCATTCTGGACAAGCATCAGGTGAAGCTGCCGCTGGAGTGCCCGCTC
CATCCGTTCCGGGATGTCTTTGCCCCCCGCCAGGATGCCAAGCAGAGGGA
TCGACCTACTCAGTGGACGTGCAGGAAATGTGGCAAGAGCTTCTACCAGG
AGAAGCATCTGGACTTACATTTCGACACACGCCACAAGAGCATCATCAAT
GAGGCGGAGGATGCCGTTTGCCTGGCCGACTTCTGCGACATTATGCGGTG
TGAGGTATTTGAAACGGAGGACGCATCTAGCCTGAAGTTTGGTGACCAGC
ACATTGTCACGGACATCGAGGTCTGGGGCGACTCCCTGGGCCAGAACTCC
GCGTTGGCCAAAGCGAATGCTGCCTACTTGAGCTTAATACCTAGAACTTC
CACATTGGGTGCCTCGCGTGCCGCCAAAGTACAAAATCGTCAATTACTTC
AAGACAAGCCAAGCCAGGCCAGCAAGCAGAATCAGTCACCGGCAGGTGAG
CGAACACATCCCCAATCCCACCACCATCCCCGAGATCGTGCATCCACCAC
AGCCAATCCCCTTCGCCTAGATCCATCGCCGGAGGACGGGTCGGCGGCTA
GGCCCAGGTCGGCGGGCGAGAAGCTGCTTAACAAGCTTAAGGAGCTGGGG
AAAGGCGCACCTAAAGCCGGCAGCGGATCCGGAGGCCAGCAGGCAGAACG
AGACCGGCGAGGAGGAGGACGAAAAGGGGAGTGACACCTGAGGGCAGTGG
CCAGTCCGCTGATGAGTCAAACGGAGGAGGGATCGGGGGCTAATGGAAAC
GGAAACAGCCAGAGCCATTGCAGCCGGAGGAGTGAGTAGCTGAGACCGCT
GCAGATCTGCTAGGAGCTGCATCGGGGATGCTGCTGTCATGTCGGATCAG
CTCAGAATGAGATGAATGACAGGCGGTTGCTGTACTGACTGCCATCGAAC
TGGGAGGATGTCATGGAC
UFO06426.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4133-RC | 2642 | CG4133-RC | 271..1329 | 9..1050 | 4835 | 98.2 | Plus |
| CG4133-RA | 2629 | CG4133-RA | 271..1329 | 9..1050 | 4835 | 98.2 | Plus |
| CG4133-RB | 2554 | CG4133-RB | 271..907 | 9..645 | 3185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 456793..457212 | 541..957 | 1865 | 97.9 | Plus |
| 2L | 23513712 | 2L | 456537..456729 | 352..544 | 965 | 100 | Plus |
| 2L | 23513712 | 2L | 456287..456469 | 172..354 | 915 | 100 | Plus |
| 2L | 23513712 | 2L | 456084..456225 | 34..175 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:03:24 has no hits.
UFO06426.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:39 Download gff for
UFO06426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4133-RA | 251..1317 | 1..1050 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:00:42 Download gff for
UFO06426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4133-RA | 263..1329 | 1..1050 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:55 Download gff for
UFO06426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4133-RA | 263..1329 | 1..1050 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:55 Download gff for
UFO06426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 456086..456223 | 36..173 | 100 | -> | Plus |
| 2L | 456289..456468 | 174..353 | 100 | -> | Plus |
| 2L | 456539..456729 | 354..544 | 100 | -> | Plus |
| 2L | 456797..457319 | 545..1050 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:00:42 Download gff for
UFO06426.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 456086..456223 | 36..173 | 100 | -> | Plus |
| arm_2L | 456289..456468 | 174..353 | 100 | -> | Plus |
| arm_2L | 456539..456729 | 354..544 | 100 | -> | Plus |
| arm_2L | 456797..457319 | 545..1050 | 96 | == | Plus |
