UFO06427.5prime Sequence
1100 bp (992 high quality bases) assembled on 2009-08-18
> UFO06427.5prime
CAGTCGACATGACGAGAAACGCGGCGGTGAGTGGCGATGAACCCGACGAG
GAGCAGGCGTCAGCGGTAGTCGCTGAAGGTGAGGATCAGGAGACTCAAAA
CCAGGCGATGCAGGATGATGGGCAACCAGGAGGCGAGGGCCACCACCTCA
GCAGCGAAAAGCAACAATCGACAGAGCAGTGTCGTCAGAGGCCGCGGAAA
AAATTGACGGACAAGCAACCACAACGAAGTGCTGCCAATTCGCATCCAGA
GCAGGCGGATGCGGACACGGACTCCAGCTCCTGCGAAGGCATTAAAGTGG
GTCAGCGGAGGGGCACGCGGGTGAGCTACGCTCAGAGAAACCTTCATGGG
GCGGAGCTGGAGGACTACGACTACGATGGGGAAGGGGAGGGGGAGCGGGA
GGAAGATGGGGAGGAGGAAGAAGAGGAGGAAGAATCCTACGACGACTACG
AACAGTCCTCGAAACCGGAGGGACGTCGACCTTCTGCCCGAACCGCCTTG
AGCGTCCGCAGCAGACGAAAGACGAAAACCCGTCAAATTTGCTATGCATC
CTCGGACTTGGAGCTGGGAATTGGCGACGGACCCAACCTAATCGACGGCG
AGACCCTGCATAAACGCCGCTGCATCTCCAAGGGACAAATGCGGGAATTC
CGGGAGGCCTTCCGGCTCTTTGACAAGGATGGCGATGGCTGCATAACCAA
AGAGGAGCTCGGCACAGTGATGCGGTCACTGGGACAATTTGCCAGAGTAG
AAGAGCTGCAGGAGATGTTGCAGGAGATCGACGTGGACGGGGACGGGAAC
GTCAGTTTTGAGGAGTTCGTTGATATCCTGTCAAACATGACGTACGAGGA
TAAGTCAGGTCTATCCTCCGCCGATCAGGAGGAGCGGGAACTACGCGACG
CCTTCCGCGTCTTCGACAGCACAACCGGGGATACATAACAGCCTCTGACT
TGCGAGCCGTGCTGCAGTGTCTGGGCGAGGATCTCGACGAGAGACATGAG
ACATGATCAGGAGGTGACGTGACGCGACGGCGCATTGACTTCTACGAGTT
GTCCACGCATGGGAGAACGAGACTCGCAAGAAACGACGACAGAATGTGAA
UFO06427.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11638-RA | 2462 | CG11638-RA | 376..1482 | 9..1098 | 5090 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1015468..1016247 | 790..11 | 3900 | 100 | Minus |
| X | 23542271 | X | 1015147..1015350 | 991..789 | 970 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:05:51 has no hits.
UFO06427.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:38 Download gff for
UFO06427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11638-RA | 370..1482 | 1..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:56 Download gff for
UFO06427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11638-RA | 370..1482 | 1..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:49:48 Download gff for
UFO06427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11638-RA | 370..1482 | 1..1098 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:49:48 Download gff for
UFO06427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1015136..1015349 | 790..999 | 97 | <- | Minus |
| X | 1015469..1016251 | 4..789 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:56 Download gff for
UFO06427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 909169..909382 | 790..999 | 97 | <- | Minus |
| arm_X | 909502..910284 | 4..789 | 99 | | Minus |
