UFO06428.5prime Sequence
1080 bp (1007 high quality bases) assembled on 2009-08-18
> UFO06428.5prime
CAGTCGACATGACTGTGAAATTGGCCAAGCTGTTTGGGGGCGTGACAACG
GGTGGCATTGAGATTCTGGACTCCCCGGGCAATCCGCAACAGCATCAGGA
GCAACAGCATCTGCAGCAACAGCAACAGCAACCACTAACAGCACCGCAAC
AACATATGCAACAGCAACCACCACCTCTGCCGCCACCAAATGCGAATATG
AAGAGTCTCAAGTATTATGAGCACCTGCAGGCCACCTACGACTGTCACGA
TCTGATGGATCATGACCAGGATCAGGATGACTACGAGGACACCTGTATGC
AGCGCAACCATCCGTATAACAATTCGCAGAGACCGCTTTTGGGCGACAGG
CGACCGCAACTCACTGTGATGAGTGTGGGTAAAAAGGGTGCAAAGTCTGG
GATGCAAGTGCAGAATCTGCCACCATTGCCGCCACTAAGGACATACATCT
CACCATATGTGCAGCAACAGAAACGGGATAGCGCGAAGGGATTGCATGGA
TTCAATGACTTCGATGCCCTGTCCCAGCAATATAATCAACACCTTCAGAG
TCCACACATTGGCTATCCCTATGGCAGTCCACCGTCGCCAACGGCTCAAT
CCAGTGATTTTTGCTTTGATCGCCAAACTGGTTTGGTCATGCTGCCCGGC
ACCGCGGGTGGCCAGGTCAGCTCGAGCAGTTCGAGCAACTGCAGCAGTTC
GCACACCACGTCCACCTCCTCGCCCACTAGATATTATCCGGATAATCCCG
GTCATGCCACTGGTCTTTTTGCCTCCCGCTTCGAGGATGACTTTTGCATG
CGTCGTCCTGCCGTCCAGGAAAGTTCATCGCCCATCATTGCCGGTGGTTG
TGGAGGCGGACAGGATCAGGATCAGGAGTGGCACTAGGAGTAGTGGAGGA
CCCTTCATCTTTGGCATTGCACGGAGCAGCAGTCACGATATGGAGCACCA
CTGCACACTCTCGCAGCTGAACAACATCTGTGATAGTCGAGCCACTGCAC
ATCGCTGACGACCAGTGCGGCAGCATGCACCTCCATCCTATGCTAGCGTA
ATCAAGAGACACGAGCAGCGAGCACACGAG
UFO06428.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoU-RC | 2649 | CG34104-RC | 473..1493 | 9..1008 | 4600 | 97.9 | Plus |
| RhoU-RB | 2687 | CG34104-RB | 511..1531 | 9..1008 | 4600 | 97.9 | Plus |
| RhoU-RA | 2228 | CG34104-RA | 511..1531 | 9..1008 | 4600 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10122197..10123123 | 9..932 | 4485 | 99.7 | Plus |
Blast to na_te.dros performed 2014-11-28 20:12:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tabor | 7345 | Tabor TABOR 7345bp | 906..961 | 964..909 | 109 | 66.1 | Minus |
UFO06428.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:37 Download gff for
UFO06428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34104-RB | 497..1450 | 1..947 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:04 Download gff for
UFO06428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34104-RA | 503..1456 | 1..947 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:33 Download gff for
UFO06428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoU-RA | 503..1456 | 1..947 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:33 Download gff for
UFO06428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10122189..10123142 | 1..947 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:04 Download gff for
UFO06428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10016222..10017175 | 1..947 | 98 | | Plus |
