UFO06429.5prime Sequence
1124 bp (1005 high quality bases) assembled on 2009-08-18
> UFO06429.5prime
CAGTCGACATGGGAGCGACACCGAAAACAGACTTTCCGGCTCACTGGCTG
CTGTGTATCCTTCTGGCTCTCGGCTCCTTATCCTCGAAAGCGAATGCCGT
TAGTGCTTATGGCGCCTCCTTCATTTCGAACCCATCCATATATGCATACA
GTGTCGAAAATCAGCCGGATGAACGCGAGTCCAGGGACAACAACATCAAG
TTTGCCGCTGAGCACGGCAATCTGAATTCCAATTCCAATCTGAATCGTAA
TTACTACTACACCGATGATCCCAGTCCCGTTTCCAATCTGAATCCGACTG
CCTCGCTGGCCACGCCTCCCGCCACCCAGCCCGCCCCGCAGACGGGCTGC
ACCCTGGACCGCCTGGCCGTCTACAAGGTCGTCTTGCACACCTACTGGAC
CCGGGAGCTCTTCCCCAAGCACTATCCCGACTGGCGACCCACCGCCCAGT
GGACCAAGACATTAGGTCGCACCCACAATGCCAACTATGCACTGTACCAC
ATTGGACAACCGGCGACGGCGGCTGTCAAACAGTTTGCGGAATCGGGACG
AACGGATCTGCTGGACAGCAATGCCGGCGAGCAGCAGCAGGTCCAGATGC
AGCTGCAGTCGCAGATGCAGGCGGGCAAATCCCCATCAGGTGGGATCAGC
AGCGGCACGACTAGTTTCAACGCCACAGCCGCATCCACAGCCACACCCAC
TGGTGGTAGTGGTGGCAGCGGTGGCAGCGGTGGCAGCGGTGGCACTGGCA
CCACCACCGCCGAGCGCAGCGTGTTCGATGAGTTCAGCATGCCGGCGATT
CCGATGGGCGCCGGACGCAGTGAGGCAAAAGTGTTTGTCGACAGCAATCA
CAGTCTGGTCTCGCTAATGACACGCATTGTTCCCTCGCCGGACTGGTTCA
TCGGCGGGGATTCGTTCGAGCTCTGCGTGGGTGGCTCCTGATCGATACGG
TGACGTTGAGCTGGATCCTTTGGATGCGGCACGGATAATGGCTTCACTCA
CGGCGCCACTGGCAACAGACTCAGGCGTCATCTATCGATCACCTCGCGTT
ATCTGACATCTGCGGGTAGCTTTATATCGAAAGACAACGATGCGCCATCG
CCCGGTCAGTTATCAGCGTAGATC
UFO06429.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mspo-RB | 3131 | CG10145-RB | 351..1434 | 5..1073 | 5045 | 98.4 | Plus |
| mspo-RA | 2574 | CG10145-RA | 351..1434 | 5..1073 | 5045 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14712810..14713272 | 467..5 | 2300 | 99.8 | Minus |
| 2R | 25286936 | 2R | 14684153..14684609 | 920..464 | 2270 | 99.8 | Minus |
| 2R | 25286936 | 2R | 14683691..14683772 | 997..919 | 260 | 96.3 | Minus |
| Xmm | 1049845 | Xmm | 780128..780174 | 702..748 | 190 | 93.6 | Plus |
| Xmm | 1049845 | Xmm | 745118..745160 | 744..702 | 185 | 95.3 | Minus |
Blast to na_te.dros performed 2014-11-28 18:56:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 679..721 | 740..698 | 161 | 86 | Minus |
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 684..717 | 744..711 | 152 | 94.1 | Minus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 631..777 | 650..504 | 144 | 61.5 | Minus |
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 689..722 | 748..715 | 134 | 88.2 | Minus |
UFO06429.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:36 Download gff for
UFO06429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mspo-RA | 346..1450 | 1..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:39 Download gff for
UFO06429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mspo-RA | 347..1451 | 1..1087 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:35 Download gff for
UFO06429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mspo-RA | 347..1451 | 1..1087 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:35 Download gff for
UFO06429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14684153..14684607 | 466..920 | 99 | <- | Minus |
| 2R | 14712812..14713273 | 1..465 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:39 Download gff for
UFO06429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10571658..10572112 | 466..920 | 99 | <- | Minus |
| arm_2R | 10600317..10600778 | 1..465 | 99 | | Minus |
