UFO06430.5prime Sequence
1142 bp (1038 high quality bases) assembled on 2009-08-18
> UFO06430.5prime
CAGTCGACATGACTACCTTAATAGAACAGTTAATTACGAAAATGGGCCTA
AGGGAGGAGCCAAACGTGCTAGAGAAAACCACCGAACTAGTACGCCTCCT
GGAACTGCGCTCCACGAATGTCCCTCTGCAGATCAACGAGTACGGAAAGA
TAGTGCTGTGTGCGGATCTCGCTTCCTGCATGATTGGGATCGCTTTCGAC
AAGGAGCAGGCACTGAAATTGTCAGGATTGCGAAAGAGCCAATACCTCAA
CAACAAGCGGATGTTCGAGAAGCTACTGGACCTAAACAAACTGGCTAGCG
TGAATGACATCTGTGTCCAGCTGGGTCTCAACGAAGTTGCCCGCAAGGCG
GAAGAGCTAATGACTCTCTTCAAGGGCGTAGCGGCCACCGAGGACATGGG
TACCGACACCAGCCATCCTCAGTACGCCACCATGGCCGTGTTCCAGGCCT
GCCGCCTGCTCAAAAAGAAGGTTTCGAAATCAAAGCTCATGCCCTTCAGT
AATTTGCGACCCTCCCAGTTTCAACTGCTCGAGCAGCAGTGGGAACGCAT
GATAGCTAAGCACCACAAGGAGAGCAAAGTACCATCTAGCACCGATATGG
AGGGTAAACTTAAGGAGAACCAGAATGAGAATATCAAGGGTCATGAGGCA
AAAAAGGCACATAAGCCCCCACCGGAGGACTACGAAATATGGAAGGCGCG
AATGTTGGCCAAGGCGCAGGCCAAATTGAAGGAATTAGAAGCATCCCAAT
CGCATATGGATAGCCAGCTTCTCGAGGCTGCAAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAA
TCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGAT
TCTCACAATAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAATCCAGA
TGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCGAGCGAGCTC
GATATCAAATTACGCCCCGCCTGCCCTCATCGCAGTACTGTGTATCATTA
GCATTCTGCGACTGAGCCATCACAACGCATGATGACTGATCGCAGCGCAT
CAGACCTTGGGCCTTGCTATAATTTGCATGGTGAACGGGGCA
UFO06430.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Orc6-RA | 972 | CG1584-RA | 92..862 | 9..779 | 3855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9845568..9846273 | 779..74 | 3530 | 100 | Minus |
| 2R | 25286936 | 2R | 9846329..9846394 | 74..9 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:30:54 has no hits.
UFO06430.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:35 Download gff for
UFO06430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc6-RA | 66..844 | 9..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:55 Download gff for
UFO06430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc6-RA | 92..870 | 9..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:00 Download gff for
UFO06430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Orc6-RA | 92..870 | 9..788 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:00 Download gff for
UFO06430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9845559..9846273 | 74..788 | 99 | <- | Minus |
| 2R | 9846330..9846394 | 9..73 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:55 Download gff for
UFO06430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5733064..5733778 | 74..788 | 99 | <- | Minus |
| arm_2R | 5733835..5733899 | 9..73 | 100 | | Minus |
