UFO06431.5prime Sequence
1162 bp (1021 high quality bases) assembled on 2009-08-18
> UFO06431.5prime
CAGTCGACATGAAGCCCCAGAGCAAGCGGAAATCATTCCCATTCAATGCG
CCTCCTCCGGGCGGTATCATGGACTTCGGATTCGGGAGCTGCAGCACCTT
CGGCAATTCGGTGGAGAATGATCTGGTAAAATGGCAGCATAAGCGAAAAT
CCGAGCAGCCGGCACCGGCAGTGCTACCACCCAAAATGCTTATAACCGAG
GAGAGGATCACCCAGCATTTCAGCGGTCTATCGCTGGATCCGAAGATCAA
TGTCGCCGCCACGGCCGTTGTTAGCAACAACAACAGCGTGGCCAGCGTTA
CGGGCGGACTGGCCACGGATGATATACCATCCACCAGCACCGGGAAGACC
CACCACCCCAATCCCGCCTATCAAATGGCGGCCATGGAACTGGAGCAGAA
ACTGCGCAATGCCAATCGCATCGTAATTTGTGATGGCCTTAAGCCAGGAT
CGGGTCCCGGTTCCGCTCCACCTGTAATACCACCGGAGTGGCTAATCAAG
TCCATACCACGTCCCTGCACCGCCTTGGTCCCTTGGCAGCCTTCGCCACT
GCAGATGCCGATGCCGATGCCGGAAGTCAAGATGGTGTCGCCCCAAATAG
TGGCACCCATGGCTGCGGCACCGGCGGTCCAGGAGCTGGATGACTACGAT
GACGATCTGGAGTTCTTCGAGAACAACAACACGTGCAGCGTGAATCTTAA
CAAGTCTGAGCAGGAGCACATGGACGAAGACCTGGCAAGCTTTCTAGACC
ATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAAT
CATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCT
TGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACA
AATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCA
AGCGAGCTCGATATCAAATTACGCCGTCTGCACTCATCGCAGTACTGTTG
TAATTATTAAGCATTCTGCCGACATGGGAGCCATCACAAACGCATGATGA
ACCTGAATCGCCAGCCGCATCAGCACCTTGTCGCTTGCGTATATATTTTG
CATGGTGAACGGGGCGAAAAGTGTCCAATGGCAGTTATCGAACTGGTGTC
AACTCACCAGAT
UFO06431.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mst85C-RB | 1330 | CG11993-RB | 119..844 | 9..734 | 3630 | 100 | Plus |
| Mst85C-RA | 1352 | CG11993-RA | 141..866 | 9..734 | 3630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9051187..9051745 | 176..734 | 2795 | 100 | Plus |
| 3R | 32079331 | 3R | 9050961..9051127 | 9..175 | 835 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:06:02 has no hits.
UFO06431.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:34 Download gff for
UFO06431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst85C-RA | 128..867 | 1..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:52 Download gff for
UFO06431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst85C-RA | 131..870 | 1..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:27 Download gff for
UFO06431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst85C-RA | 131..870 | 1..740 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:27 Download gff for
UFO06431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9050951..9051127 | 1..175 | 97 | -> | Plus |
| 3R | 9051187..9051758 | 176..752 | 98 | -- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:52 Download gff for
UFO06431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4876673..4876849 | 1..175 | 97 | -> | Plus |
| arm_3R | 4876909..4877480 | 176..752 | 98 | -- | Plus |
