UFO06434.5prime Sequence
917 bp (-94 high quality bases) assembled on 2009-08-18
> UFO06434.5prime
CATTCGACATGTCGGCGACCTCCACGCCAAGTTCGGTGACGAGGAAATCA
TCGCTTTCAAAAAGTTCTAGTTCAGACGCATCGGCTGACTCCTCGTCAAA
TTCCTCGAAATCTCCGACAGCCGCCAGGGGAAACTAACCGAAAATGCAGT
ACACAAAAACCAGGGAGCGCATGGTCGATGATGTTCCCTTTCCGCCCCCC
CACAAGCTGACCATGTCGGAGGTATACGACGATCCAAAGACCGGAAAACC
CTACTTCGACGCCCTGCGCCAGCACTTTCTGCTGGAGGGGCGGATCGAGG
AGGCGGTGGCCCTGAGGATCATCACCGAAGGACCCGCCCTGCTGCGCAAG
GAGAAGAACATGATCGACATGGAGGCACCCATTACCGTGTGCGGTGACAT
CCACGGGCAGTTCTTCAATCTCGTAAAGCTCTTCGAAGTGGGCGGCCCGC
CGGCCACCACTAGGTACCTTTTTCTAGGCGACTACGTGGACAGGGGATAC
TTCAGTATTGAGTGCGTTCTCTACCTGTGGTCCCTGAAAATAACCTACCC
CACCACGCTTTCCCTGCTGCGAGGAAATCACCAATGCGCGCATCTCACAG
AATACTTTTACCTTTCAAGCAGGAATGCATCATCTAGTATTTCGGAAAAG
TATTTACGACGCCTGCTTGAAAGCGTTCGACTGCCTGCCCCTCGCCCGCC
CTCCTCAACCAGCAGTTCTTCTGTTTTCACGGCGGTCTGTCGCCCGAAAT
TTTCACACTCCACGACGTCAAGACGCTGAGTCGCTTCGGGCATCAAAGGC
TCTCCGGGCCCATGGGTGAACTGCTCTGGCCCGATCCTCTGAAGGATGTT
GGAAACCAGAAGACCCATTAGTTCTTTTCTCAAACTCGGTGCGCGGTGGC
TCCAATTTCTTCGCTAC
UFO06434.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CanA1-RD | 3064 | CG1455-RD | 765..1671 | 8..917 | 3485 | 92.8 | Plus |
| CanA1-RB | 2530 | CG1455-RB | 309..1215 | 8..917 | 3485 | 92.8 | Plus |
| CanA1-RA | 2628 | CG1455-RA | 329..1235 | 8..917 | 3485 | 92.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31041543..31041875 | 180..512 | 1530 | 97.3 | Plus |
| 3R | 32079331 | 3R | 31040138..31040310 | 8..180 | 700 | 93.6 | Plus |
| X | 23542271 | X | 16558599..16559068 | 744..270 | 545 | 75.8 | Minus |
| 3R | 32079331 | 3R | 31042296..31042423 | 647..775 | 490 | 93.8 | Plus |
| X | 23542271 | X | 16567198..16567667 | 744..270 | 440 | 74.3 | Minus |
| 3R | 32079331 | 3R | 31041962..31042059 | 511..608 | 415 | 94.9 | Plus |
| 3R | 32079331 | 3R | 31042510..31042618 | 805..912 | 225 | 82.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:38:24 has no hits.
UFO06434.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:44 Download gff for
UFO06434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanA1-RA | 320..1233 | 1..917 | 92 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:19 Download gff for
UFO06434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanA1-RA | 322..1235 | 1..917 | 92 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:58 Download gff for
UFO06434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanA1-RA | 322..1235 | 1..917 | 92 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:58 Download gff for
UFO06434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31041544..31041875 | 181..512 | 97 | -> | Plus |
| 3R | 31041964..31042075 | 513..626 | 93 | -> | Plus |
| 3R | 31042278..31042423 | 627..775 | 92 | -> | Plus |
| 3R | 31040131..31040310 | 1..180 | 91 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:19 Download gff for
UFO06434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26865853..26866032 | 1..180 | 91 | -> | Plus |
| arm_3R | 26867266..26867597 | 181..512 | 97 | -> | Plus |
| arm_3R | 26867686..26867797 | 513..626 | 93 | -> | Plus |
| arm_3R | 26868000..26868145 | 627..775 | 92 | -> | Plus |
