UFO06435.5prime Sequence
1130 bp (1024 high quality bases) assembled on 2009-08-18
> UFO06435.5prime
CAGTCGACATGCTTAAAAAAATTGCATTGTTTCTTATTATCTGGAGTTGC
GGCACATTGGCTGCGGACATCCTAATGGCTACGCAAGGCGGAACGAAGTC
ACACAAGATACCATTCTGGGAATTGGCTAAGGGATTAATATCCAGAGGTC
ACAATATTACCTTTTTAAGTGGATTTCCTGCTGATTTTAATATTGAAGGA
CTGCTCGAGGTAACACCAGCTGGTCTTGTTGAATATATCCACAACTATAC
GAATTGGGATCTCTTGGGCTCACGCATGGCGGGAGAAATGCCCATTAAGC
CCTGGGACGGACTGCGATACGCTTTCGAATCATGTGACGCAATGCTTCGT
GACTCAGAAACAAAGGAGCTGACCAAGAAAAGCTTTGATTTGGCTATATT
AGATGGAGCTTTCCCAGAGTGCTTCTTGGGATTAATGTACGACTTCAAGA
TTCCATTTATGTACATAAACACGGTGGGATTCTACACAGGCAGTATCTCG
ACTGCAGGAAATCCCGTTAGCTACGCTATTACTCCCAACTTCTATTCTCG
ATTTACGGACACAATGAATCTTTACGAACGTGCTATTAATACGGCCATGC
AGATTGGACAAACACTGATGCACATGTATGTTATGCGTCGGACTCACCTT
GTGATGCGAGAGCACTTGGGTACTCAAATCCCGCATCCTTACGAAATGTC
GCGCAACGTGAGTTTCATTTTGCAAAATGGACACGCAGTTTTGTCTTATC
CTAGAGCCTTTAATCCGAATGTAGCAGACGTGGCTTGCATTCATTGTAGG
CCAGCTAGAAAACTTCCTAGAAACCTTGAGGAATTCATCGGTGCTTCTGG
AGCATCTGGATTTATTTACGTTTCTATGGGTTCCTCCGTAAAGGCCGCGA
ACATGCCAGAGGCGTTGCGTCACATGCTTGTAAGACCTTTGCACGTCTTC
CCTATCATGTGCTATGGAAGTATGAGCAGTTCGACAGATATAAAGACACA
CATCAAACGTAAACTTGCACGGTGGTTACCGCAGCAGACATTTTGGGAAA
TCCCAGCTTAGAGCGTTTGTAACACATGGAGCTGCTAGCATGTTGGAACG
TTTATACGGATACGTGTTAATTGCGAATCT
UFO06435.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30438-RE | 2226 | CG30438-RE | 103..1201 | 7..1094 | 5185 | 98.7 | Plus |
| CG30438-RD | 2310 | CG30438-RD | 187..1285 | 7..1094 | 5185 | 98.7 | Plus |
| CG30438-RC | 2732 | CG30438-RC | 609..1707 | 7..1094 | 5185 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5547987..5548450 | 626..1081 | 1910 | 97.6 | Plus |
| 2R | 25286936 | 2R | 5547628..5547924 | 330..626 | 1485 | 100 | Plus |
| 2R | 25286936 | 2R | 5539243..5539429 | 143..329 | 935 | 100 | Plus |
| 2R | 25286936 | 2R | 5267807..5268042 | 583..330 | 755 | 87.4 | Minus |
| 2R | 25286936 | 2R | 5527295..5527376 | 7..88 | 410 | 100 | Plus |
| 2R | 25286936 | 2R | 5528754..5528813 | 86..145 | 300 | 100 | Plus |
| 2R | 25286936 | 2R | 5267588..5267660 | 1081..1011 | 205 | 91.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:03:35 has no hits.
UFO06435.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:43 Download gff for
UFO06435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30438-RD | 159..1272 | 1..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:00:49 Download gff for
UFO06435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30438-RC | 605..1714 | 1..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:00 Download gff for
UFO06435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30438-RC | 605..1714 | 1..1100 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:00 Download gff for
UFO06435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5527290..5527375 | 1..87 | 96 | -> | Plus |
| 2R | 5528756..5528813 | 88..145 | 100 | -> | Plus |
| 2R | 5539246..5539429 | 146..329 | 100 | -> | Plus |
| 2R | 5547628..5547924 | 330..626 | 100 | -> | Plus |
| 2R | 5547988..5548473 | 627..1100 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:00:49 Download gff for
UFO06435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1416261..1416318 | 88..145 | 100 | -> | Plus |
| arm_2R | 1414795..1414880 | 1..87 | 96 | -> | Plus |
| arm_2R | 1426751..1426934 | 146..329 | 100 | -> | Plus |
| arm_2R | 1435133..1435429 | 330..626 | 100 | -> | Plus |
| arm_2R | 1435493..1435978 | 627..1100 | 96 | -> | Plus |
