UFO06436.5prime Sequence
1093 bp (988 high quality bases) assembled on 2009-08-18
> UFO06436.5prime
CAGTCGACATGGTGGGAAAGGGCTCGAGCGGCCTGGGCGGAGACACCAGT
ACGGGCAGTAAGGAACGCCCTGTTTTCATTCCGCCCCGGAAACGTCAACA
AACCAAATCGGAGGCCAAGAAGCAGAACTATGTGGATCACATCGTCAGTG
TGCAGCAAAATCGACCCAAGTTGTCGCCCTCCAATCCGGGACTTGAAGAG
GAGCTCCGCAAGTCCAAGCTGATCATCAAGAACAAGCAGCCGCTGCCGCA
GCTGCCGGGAGAGCTGGGTGTGCCCAGTGCCCACGACACCCTGGCTAGCA
CCCACTCGGCCAGCTCCACGCAGCACAGCCAGAAGTCAGCCAGATCGAAC
AGTAATCTCAACGAGCTGCAGAACTTCGAGTCCATATCGCAGGGCACCAA
GTCGACGTCGCAGCGGCACGAGAGCAGTACGGTGACGCCCAGCAGCTGTT
GCTATTCGGAGAGCAGCCTGGACGCCAAGTTGAGCAAGTCGCAGGACTGC
CTGAGCAACCGGTCGTCCTCCAAGAAGCGGGTCAACATCCGTACAAGCGA
TCTGCCCGGCCAGGGGCGCAATCAGCGCTCCTCACCGGAGATAGCCAACT
ACGAAGATCTGGAGTCCGGCGAAACGAGTGTGCTGAACAACTACGACCAG
AGTCTAGAGCGGGGCTATCAGGCGCGCAAGGAGGGCGGCGGCAACTACCT
GACCATGACGGGCACCATTAAGCGGGGTCGCAAGAATGGCCAGTCCGTGG
ACCTACAGATAAACATCAGTCGCGAGGAGCTGGAGCAGCTGAACGCCCAT
GCGATGGCCAGCGACACACAGAAAGGTGGCAATTTGTGCTGCACCTGCAG
CTGTGGCACCGGCCTCCACATCCTGCTCATCTCGCTCTTTGCCTGCCGTT
TGTGACCGTCGTTTCGGCGGTATACTCCTTCTACATTGGAACGCTCACCT
GGTACATATGTTCAACTATACTGCGAGGAGAGACGTACCTGCACAAGATC
TGGTGACGCCGCTGCTGTTCGTGATCTATCCGCTGGCATCGTGCTGTGCA
CCTTCGACTGGACATCTACTCGGATGCCGCCCGCTGGAGTTCT
UFO06436.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4596-RA | 2357 | CG4596-RA | 155..1226 | 9..1073 | 5140 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10873522..10874451 | 151..1073 | 4255 | 98.9 | Plus |
| 3R | 32079331 | 3R | 10873192..10873338 | 9..155 | 735 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:05:54 has no hits.
UFO06436.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:42 Download gff for
UFO06436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4596-RA | 153..1233 | 9..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:58 Download gff for
UFO06436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4596-RA | 155..1235 | 9..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:49:50 Download gff for
UFO06436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4596-RA | 155..1235 | 9..1080 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:49:50 Download gff for
UFO06436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10873192..10873338 | 9..155 | 100 | -> | Plus |
| 3R | 10873527..10874460 | 156..1080 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:58 Download gff for
UFO06436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6698914..6699060 | 9..155 | 100 | -> | Plus |
| arm_3R | 6699249..6700182 | 156..1080 | 98 | | Plus |
