UFO06438.5prime Sequence
1113 bp (984 high quality bases) assembled on 2009-08-18
> UFO06438.5prime
CAGTCGACATGTACTATCTGAACAACGAGCCAGCCGCCCTTCCATCTCCC
GCAAATCTCGCCCCACGGGATGTGCACTCATCCACATTGGAGCTGAAGAC
GGTGTCTATAAATCCGGATGATACCTACACTGTTCAGCAGGCGATCAATG
CCTTCGGTTTCGGATGGTTTCACGTCAAGCTGTCGCTCTTGGTGGGGCTC
TGCTGGATGTCCGACTCCATGGAAATGGCCATTCTCAGCATATTGGGCCC
GTCTTTGTTCTGCGAGTGGAATGTCACCAAGTTCCAGCAGGCATCCGTCA
CAACAGTGGTGTTTTTGGGCATGATGTTGAGTTCCAGTTTTTGGACACAG
CTGAGCAACAGATATGGCCGGAAGTCGGCCCTCACATTGTTCGGAGTACT
ACTAGTGCTGTATAGCATTCTCAGCTCGGTGGCTCCCAGTTACGCCTGGC
TCCTGACCCTAAGAGGTCTCGTAGGCTTCGCCATCGGCTGCGTTCCACAG
TCAGTTACCTTGTACGCTGAGTTTCTGCCCACCAAGCACAAGGGAAAGTG
CGTCGTATTGATGGACTGCTTCTGGGCCTTGGGAGCTTGCTTTGAAGTGG
TCCTAGCACTGGTTGTGTATCCCTATTACGGATGGCGAGGTCTCTTGGCC
CTTTCGGCTACACCCCTACTCATTTTTACCATCCTATCGCCGTGGCTCAG
TGAATCGGCTCGCTATTACTCTTACAACGGTCACAATGATAAGGCCATCA
AGGTTCTGGAACAGATAGCTCACAACAACAAGCGCCACATGCTGATGGGT
CGGCTGATGGCCGACGACGAGCCCAGTTGCGCGGAGAGCTTTAGATCCCT
GCTCAGCCCGAGCCTGTACAGGACCACCATCCTGTTGTGGTTCCTCTGGC
TGGCCTCGGCCTTTTGCTACTACGGCTGTGCTGGTCACGACCGAGCTGCT
GGTGCAGGACAGAGAGCATCCCAATGAGTGCGTCACTCATGACTCGACTT
ATGGACTGCTGTGGATCACCTGTCGAGTTCTGAATACTGCTGACATCAGT
GTCAGCTGTTGCAGAAGAAAACATGTCTGCAGTACCTGGGCTGTCTGTGC
CTTGGGGCTAAGT
UFO06438.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4324-RC | 1739 | CG4324-RC | 247..1371 | 9..1100 | 4870 | 97.1 | Plus |
| CG4324-RA | 1748 | CG4324-RA | 256..1380 | 9..1100 | 4870 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24016389..24016647 | 378..120 | 1295 | 100 | Minus |
| 2R | 25286936 | 2R | 24015524..24015717 | 954..763 | 890 | 98.5 | Minus |
| 2R | 25286936 | 2R | 24015902..24016027 | 692..567 | 630 | 100 | Minus |
| 2R | 25286936 | 2R | 24016210..24016335 | 502..377 | 630 | 100 | Minus |
| 2R | 25286936 | 2R | 24016704..24016815 | 120..9 | 560 | 100 | Minus |
| 2R | 25286936 | 2R | 24015768..24015840 | 764..692 | 365 | 100 | Minus |
| 2R | 25286936 | 2R | 24016086..24016149 | 566..503 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:53:09 has no hits.
UFO06438.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:27 Download gff for
UFO06438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4324-RA | 246..1329 | 1..1060 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:32 Download gff for
UFO06438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4324-RA | 248..1331 | 1..1060 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:47 Download gff for
UFO06438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4324-RA | 248..1331 | 1..1060 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:47 Download gff for
UFO06438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24016210..24016334 | 378..502 | 100 | <- | Minus |
| 2R | 24016390..24016646 | 121..377 | 100 | <- | Minus |
| 2R | 24016704..24016822 | 1..120 | 96 | | Minus |
| 2R | 24015768..24015839 | 693..764 | 100 | <- | Minus |
| 2R | 24015902..24016027 | 567..692 | 100 | <- | Minus |
| 2R | 24016086..24016149 | 503..566 | 100 | <- | Minus |
| 2R | 24015396..24015715 | 765..1060 | 92 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:32 Download gff for
UFO06438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19903609..19903672 | 503..566 | 100 | <- | Minus |
| arm_2R | 19903733..19903857 | 378..502 | 100 | <- | Minus |
| arm_2R | 19904227..19904345 | 1..120 | 96 | | Minus |
| arm_2R | 19903913..19904169 | 121..377 | 100 | <- | Minus |
| arm_2R | 19902919..19903238 | 765..1060 | 92 | <- | Minus |
| arm_2R | 19903291..19903362 | 693..764 | 100 | <- | Minus |
| arm_2R | 19903425..19903550 | 567..692 | 100 | <- | Minus |
