UFO06439.5prime Sequence
1106 bp (1008 high quality bases) assembled on 2009-08-18
> UFO06439.5prime
CAGTCGACATGACGGAAGCAGCGGAAATCAACGGCAGAGAAGAAGTGGAG
GATGACGAGCAGGATAAAAAGCAAAAGAAATCCGATGTGAAACGACATGA
CGACGGCGCCGCAGATTTGGAACGTGTGACGGATTATGCCGAGGAAAAGG
AGATCTCTGCGGACAATATATCCAGCGCCGTGGAGCAGTTTGGCAACCAG
CGTAACAAGGAGAACGAACTGCGAGTAGCCAAAGAGAAGGAGCTCCAGAA
GGTCCAAGTCAAGAAGGAGGACATTGAACTGATTATGAACGAGCTGCTGG
TTAGCAAGGCGCATGCCGAGAAAGTGCTCCGCGAGCAGAGCGGCGATGTG
GTGGCCGCCTTGGAAGCCATCATCAGCAATGCAAGCTTTCTAGACCATTC
GTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATA
ATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGA
TTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATC
CAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCG
AGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTG
TAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGAT
GAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATAT
TTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTT
TAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACA
TATTCTCAATAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACG
CACATCTTGCGAATATATGTGTAGAACTGCCGGAAATCGTCGTGTATTCA
CTCCAGAGCGATGAAACGTTCAGTTTGCTCATGAAACGGTGTACAGGTGA
CACTATCCCATATCACAGCTCACGTCTTCATGCATACGAAATCGATGACC
ATCATCAAGCCGCCAGATGAAATAGCCGATAACCTGTGCCTAATTTCTAC
GCTTGA
UFO06439.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9922-RB | 1006 | CG9922-RB | 470..841 | 9..380 | 1860 | 100 | Plus |
CG9922-RA | 626 | CG9922-RA | 90..461 | 9..380 | 1860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14035444..14035551 | 284..177 | 540 | 100 | Minus |
3R | 32079331 | 3R | 14035824..14035929 | 114..9 | 530 | 100 | Minus |
3R | 32079331 | 3R | 14035183..14035278 | 380..285 | 480 | 100 | Minus |
3R | 32079331 | 3R | 14035620..14035684 | 177..113 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:06:58 has no hits.
UFO06439.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:41 Download gff for
UFO06439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9922-RA | 228..608 | 1..380 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:12 Download gff for
UFO06439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9922-RA | 81..461 | 1..380 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:57 Download gff for
UFO06439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9922-RA | 81..461 | 1..380 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:57 Download gff for
UFO06439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14035824..14035938 | 1..114 | 96 | | Minus |
3R | 14035183..14035278 | 285..380 | 100 | <- | Minus |
3R | 14035444..14035551 | 177..284 | 100 | <- | Minus |
3R | 14035621..14035682 | 115..176 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:12 Download gff for
UFO06439.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9860905..9861000 | 285..380 | 100 | <- | Minus |
arm_3R | 9861166..9861273 | 177..284 | 100 | <- | Minus |
arm_3R | 9861343..9861404 | 115..176 | 100 | <- | Minus |
arm_3R | 9861546..9861660 | 1..114 | 96 | | Minus |