UFO06442.5prime Sequence
1129 bp (1009 high quality bases) assembled on 2009-08-18
> UFO06442.5prime
CAGTCGACATGCGAAATAAATTTCAATCCGCTATTAGGGGCGTAACGCGA
CAATACATTATAAGATCGTGGCCCCGAGGCAGAGAGCTATTGAGGACGCA
ACTGATTATCCCGCCATCTTCTACATCTAGCCCATTTACCTGTAGAAACT
ACTCAAAGTTTAGCACACATTTGTCTATGGAGCGGGCGTTGGAGTTGCTA
TGCAACCTTGATGACGAGGAACGCGGCAACCTGCGCTCCGCTCTTGGCAG
GCTAGATGCCGACAAGGAAAAAAAATTATACGAGAGTCAACTGGCTTTCG
GTAGTTGGCGCACTCGCTTCGGACGACTTTCTAATAAGACGGAATTGGGC
CAAGTTATTGCGGGAACTTTTTGCGCAGTGCCCGATGATTGGCTGCGAAA
AAAATTGGTTGAGACGGCAGCATCCCCCACGGCAGGTCAATTGTACAGCA
TTTTCTTTGTAAATGCAGTGCCGTTTATCGCTTTCGGATTCCTTGACAAT
TTCATAATGATCATGGCGGGTGAATACATTGAATATTATTTGGGCCACTT
TATAACGCTGTCTACAATGGCAGCCGCAGGACTAGGAAACACCATAAGCG
ATATTTTAGGCATCACTATGGCCACCTACGTTGAGAATGGGTGCCAGATA
TTGGGTCTAAAGCAGCCCAATTTGACTCCAGCGCAATTTGAATTAAGTCT
AGCAAGCGGTCTTCAAGTTACGGACGGATTGTCGGGATCACTGTAGGCTG
TTTGCTTGGAATGTGTCCTTTATGGTTTATGGATGAAAAAGCAGATAAGG
TGAATGTAAAAGATGAAATCCCGAAAAATGCAAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAA
TCATAATCACAACTAGCCTAGAGATCCTGGTCATGACTAGTGCTTGGATT
CTCACCAATAAAAACGCCCCGGCGGCAACCGAGCGTTCTGAACAATTCAG
ATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTTCAGCGAGCT
CGATATCAAATTAGTCGCTGCCAGTCATCGAGTACTGTTGTATTCATTAG
CATTCTGCGACTTGAGCACCACACGCATG
UFO06442.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17715-RB | 1624 | CG17715-RB | 293..1114 | 9..829 | 4085 | 99.9 | Plus |
| CG17715-RD | 5581 | CG17715-RD | 352..1173 | 9..829 | 4085 | 99.9 | Plus |
| CG17715-RG | 1439 | CG17715-RG | 293..1084 | 9..799 | 3935 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 808242..808520 | 287..9 | 1395 | 100 | Minus |
| 2L | 23513712 | 2L | 22844571..22844849 | 9..287 | 1395 | 100 | Plus |
| 2R | 25286936 | 2R | 803458..803663 | 722..518 | 980 | 99.5 | Minus |
| 2L | 23513712 | 2L | 22849428..22849633 | 518..722 | 980 | 99.5 | Plus |
| 2R | 25286936 | 2R | 803999..804121 | 408..286 | 615 | 100 | Minus |
| 2L | 23513712 | 2L | 22848970..22849092 | 286..408 | 615 | 100 | Plus |
| 2R | 25286936 | 2R | 803291..803402 | 829..718 | 545 | 99.1 | Minus |
| 2L | 23513712 | 2L | 22849689..22849800 | 718..829 | 545 | 99.1 | Plus |
| 2R | 25286936 | 2R | 803717..803785 | 519..451 | 345 | 100 | Minus |
| 2L | 23513712 | 2L | 22849306..22849374 | 451..519 | 345 | 100 | Plus |
| 2R | 25286936 | 2R | 803836..803878 | 450..408 | 215 | 100 | Minus |
| 2L | 23513712 | 2L | 22849213..22849255 | 408..450 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:06:39 has no hits.
UFO06442.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:40 Download gff for
UFO06442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17715-RD | 306..1127 | 9..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:05 Download gff for
UFO06442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17715-RD | 352..1173 | 9..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:48 Download gff for
UFO06442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17715-RD | 352..1173 | 9..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:48 Download gff for
UFO06442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22849693..22849800 | 722..829 | 100 | == | Plus |
| 2L | 22844571..22844847 | 9..285 | 100 | -> | Plus |
| 2L | 22848970..22849092 | 286..408 | 100 | -> | Plus |
| 2L | 22849214..22849255 | 409..450 | 100 | -> | Plus |
| 2L | 22849306..22849373 | 451..518 | 100 | -> | Plus |
| 2L | 22849429..22849632 | 519..721 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:05 Download gff for
UFO06442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22737303..22737579 | 9..285 | 100 | -> | Plus |
| arm_2L | 22741702..22741824 | 286..408 | 100 | -> | Plus |
| arm_2L | 22741946..22741987 | 409..450 | 100 | -> | Plus |
| arm_2L | 22742038..22742105 | 451..518 | 100 | -> | Plus |
| arm_2L | 22742161..22742364 | 519..721 | 99 | -> | Plus |
| arm_2L | 22742425..22742532 | 722..829 | 100 | == | Plus |
