UFO06443.5prime Sequence
1129 bp (1025 high quality bases) assembled on 2009-08-18
> UFO06443.5prime
CAGTCGACATGAGTGGAGCTCTCGGAGATGTGGTGTCCGAATACCTGGAG
CGCGGCCCAGTGCTCGTGGTGGCGGACCTCCTTAGCCTGATAACGGTCTC
GTCCTGCCTGGTGATCAAGGTTCCGCAGATAAACACGATACGGGCGAACG
AGTCCTCGAAAGGCATCAGTGTTTTGGGACTGTGCCTGGAGCTGTTCAGT
TATACGGTGATGTTGTCGTACAACTACACCAGTGGCTACGACTTCCTCTC
GTACATGGAGTATCCTGTTTTGCTGCTGCAGGAGTACGCCCTGATTTACT
ACGCCTTCAAGTACCAGGATCTGCTGGGAAGGAGGACGCAAGTGGTGGCC
ATACTGTATAGTATAGTGGCCACTCTCATATACATGAAGCTCTTTCCCAT
TATCATCCTTAAGTTCCTGGTGCCTTTCTGCACTCCCATTGGAGCCACGA
GTAAGGTCCTCCAGCTGCTGGCTATTCTGAGGACCAAGGATGCCAGTTCC
GTCAGTAGAACCACATGGGCGCTCTCCGCCTTTACAAACATGACTCGAAT
CTACACGGTGTTCTTCCAGTCCCACGATTGGATGTTGCTATCAAACTTCC
TGATTTCGACGTTCCTTAGCGCCTCCGTTTTCACCGCCGCTTGCGTCTAC
AAGAAGAAGGCCAAGGCGGAGGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAG
TTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATA
TCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATT
AAGCATTCTGCGACATGGAGCCATCACAAACGGCATGATGAACTGATCGC
AGCGGCATCAGCACCTTGTCGCCTTGGCGTATAATTTTGCCATGGTGAAA
CGGGGCGAAGAGTTGTCATATTGCAGTTAAATCAACTGGTGAACTTCCAG
AATGCTGAACGAAACATTTCCATACCTTA
UFO06443.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1265-RB | 828 | CG1265-RB | 40..702 | 9..671 | 3315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4255034..4255295 | 161..422 | 1310 | 100 | Plus |
| 3L | 28110227 | 3L | 4254815..4254969 | 9..163 | 775 | 100 | Plus |
| 3L | 28110227 | 3L | 4255800..4255927 | 544..671 | 640 | 100 | Plus |
| 3L | 28110227 | 3L | 4255609..4255730 | 422..543 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:57:54 has no hits.
UFO06443.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:39 Download gff for
UFO06443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1265-RB | 34..709 | 1..679 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:13 Download gff for
UFO06443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1265-RB | 32..707 | 1..679 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:13 Download gff for
UFO06443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1265-RB | 32..707 | 1..679 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:13 Download gff for
UFO06443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4255036..4255295 | 163..422 | 100 | -> | Plus |
| 3L | 4255610..4255730 | 423..543 | 100 | -> | Plus |
| 3L | 4255800..4255932 | 544..679 | 97 | == | Plus |
| 3L | 4254807..4254968 | 1..162 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:13 Download gff for
UFO06443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4254807..4254968 | 1..162 | 98 | -> | Plus |
| arm_3L | 4255036..4255295 | 163..422 | 100 | -> | Plus |
| arm_3L | 4255610..4255730 | 423..543 | 100 | -> | Plus |
| arm_3L | 4255800..4255932 | 544..679 | 97 | == | Plus |
