UFO06445.5prime Sequence
1096 bp (988 high quality bases) assembled on 2009-08-18
> UFO06445.5prime
CAGTCGACATGAGCAAGTACCATAAGGAGCGCAAGTACGCCAAGTTCAGG
TACTACATGGAGAAGTACTACGTGCTGCCGCTGGAGCTGAAGAACGACAT
CATCTACTGCCAGCGATCGCTGCGCGATTTCCTCAAGGTTCACGCGTTGG
TCTCGGAGGTCTTCGATGAGCAGGCGGATGCGGATCCAGTGCAGATGCGT
CGCATCTTGGACGAACTGGAGGAGGAGGTGTACGAGATCAATGCCGAGCA
GCAGTTCCTTCTGCTACGCCTCAACGATAGCCTACAGGAATTCTCCGTGA
AGCTGAAGGAGAACAACATCATGTTCCTGCCGGACATCGCCCATGAGTAC
GTTTCCGCCCAGGTAGTGCCTTTGATCGTCGATCCCAACTATAAGATTAT
GCCACAGTCGGTGATGGCTCGTGATACCGAGGAGATGCTTATTCGCAAGC
ACTTCCTGCTGAGCCAGGACGATGATTCTGGTATGCCGCCGCTTAAGCTC
AGCGAATTGGATGAGAATATACCATTGATGCTGGCTCCGCCGGTTAGGGG
ATTGGGTCAGCAGATCGCCGCCGTTAAGCCGGAGCCAGAGTGGCTCCAAG
GCGATGAGGCGACAGTATCAGTGCCACCGCCGCCGCCACAATCGAAGTCG
AAGCTGATGAAAGGGTCGCTGGATTCGACCCCGGCCAAGCGAGAGAATAT
CAGCCGCAGCTCACCGCCGCCCTTGGCGCCTATAACCCAAACCGTAGTGG
CTGAGTTGTCACAAGTACCTCCATCACCACAAGCAGAATCTCCACCAGTA
AACTTTCACGTTGTGGCCCAGAGTCGCAAGAACTTGCAGCAGCATTGAGA
AGGGCCAGAAAGACGAAGCAGCAGCCACGTTTTGTTCGACGACGAGGAGG
ACCTGGAGATCACCAGTTTGCAGAACGATCGCACAAGAACAGAACCAGCG
ATGGCAAGGGACACCGCCATCGCTGGAGCCACGATGCTGCTGCATCAGCA
GCCAGAAGACCATTCCTCAATGTTTAGTCAGGGGATGGCGAGAATAATAC
GCGAGAGCAAAAACGGCAGAATCCTCGCCACGCCCATCATGACGTC
UFO06445.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lint-1-RE | 2412 | CG1908-RE | 392..1487 | 9..1086 | 4955 | 97.8 | Plus |
| Lint-1-RA | 2291 | CG1908-RA | 271..1366 | 9..1086 | 4955 | 97.8 | Plus |
| Lint-1-RD | 2535 | CG1908-RD | 688..1610 | 182..1086 | 4090 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11150635..11151436 | 182..981 | 3815 | 99.5 | Plus |
| X | 23542271 | X | 11149714..11149851 | 9..146 | 690 | 100 | Plus |
| X | 23542271 | X | 11149924..11149961 | 146..183 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:45:05 has no hits.
UFO06445.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:38 Download gff for
UFO06445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1908-RA | 266..1333 | 9..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:10 Download gff for
UFO06445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lint-1-RA | 271..1338 | 9..1064 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:54 Download gff for
UFO06445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lint-1-RA | 271..1338 | 9..1064 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:54 Download gff for
UFO06445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11149714..11149851 | 9..146 | 100 | -> | Plus |
| X | 11149925..11149960 | 147..182 | 100 | -> | Plus |
| X | 11150636..11151529 | 183..1064 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:10 Download gff for
UFO06445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11043747..11043884 | 9..146 | 100 | -> | Plus |
| arm_X | 11043958..11043993 | 147..182 | 100 | -> | Plus |
| arm_X | 11044669..11045562 | 183..1064 | 97 | | Plus |
