UFO06447.5prime Sequence
1111 bp (994 high quality bases) assembled on 2009-08-18
> UFO06447.5prime
CAGTCGACATGGGCAGCAGCGCCACGCAAACCACGGTGCCGTTCCGTGCA
ATTTGTTTATGTCTGCTGATCGCCAGCTGCTACGTGTCGCTCTCCCAGGC
AGATGAGCACAATCACAAGTACAATGACCGGGAGGAGGTGGTACTGTGGA
TGAACACGGTGGGCCCGTACCACAATCGGCAGGAGACGTACGCGTACTTC
TCTCTCCCCTTTTGCAGTGGCCAGAAGTCCTCGATATCGCACTACCACGA
GACGCTGAGCGAGGCGCTGCAAGGAGTCGAGCTAGAGTTCAGTGGCTACG
AGATGGAGTTCAAGAGCGACGCCCCCAAATCGGTCATCTGCATGGTCACC
TTGCAGGAGGAGAGCGCCAAGGCATTCACCTATGCCGTGAAGAACGAGTA
CTGGTACCAGATGTACATCGATGGACTGCCCATTTGGGGAAAAGTCGGTG
AGCGCGACGAGCGCGATGGCAAGTACTATATCTTCACGCACAAGAAGTTC
GACATCGGCTACAATGGCCAGCAAATCGTGGATATCACCCTGACCACCGA
GGGCCGCGAGGAACTCAAGCCGGGATCCCACATCAACTTCTCCTACGAGG
TCAACTGGAAGCCCAGCAAGGTGGAGTTCAAGAATCGATTCGACAAGTAC
CTGGATCCCAACTTCTTCCAGCACAGGATCCACTGGTTCAGCATCTTCAA
CAGCTTCATGATGGTCATCTTCCTGGTGGGTCTGGTGTCCATGATTCTGA
TGCGAACTCTGCGCAAGGATTATGCTCGGTACAGTAAGGACGAGGAAATC
GACGACATGGAGCGAGATCTTGGTGATGAATACGGCTGGAAGCAGTGCAT
GGCGATGTCTTCCGTTCTCCGCCCAACACACTGCTCTTCTCGGCGTGGTG
GGCGCTGGATACCAACTGATTTCGGGTGTATTCTGTGTGATCATGTTCGC
CATAGTGGTGATTGTACACGGAACGCGGCTCATGCTGTCCACGGCTATAT
TTGTGTATGCGGCACCTCACAATCATGGAATACTTTGAGATCGCTCTATG
CCCGCCTGGGTTGACGCATGTTGATCCGACGATGCCTGGTTTCGCTTTAG
TTCCAGTGGCT
UFO06447.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10590-RA | 2653 | CG10590-RA | 182..1297 | 9..1111 | 5110 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5603072..5603631 | 677..118 | 2800 | 100 | Minus |
| 3L | 28110227 | 3L | 5602543..5602955 | 1080..677 | 1530 | 95.9 | Minus |
| 3L | 28110227 | 3L | 5603688..5603798 | 119..9 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:22:39 has no hits.
UFO06447.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:29 Download gff for
UFO06447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10590-RA | 169..1293 | 1..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:44 Download gff for
UFO06447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10590-RA | 173..1297 | 1..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:59:26 Download gff for
UFO06447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10590-RA | 173..1297 | 1..1111 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:59:26 Download gff for
UFO06447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5602508..5602954 | 678..1111 | 95 | <- | Minus |
| 3L | 5603072..5603629 | 120..677 | 100 | <- | Minus |
| 3L | 5603688..5603802 | 1..119 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:44 Download gff for
UFO06447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5595608..5596054 | 678..1111 | 95 | <- | Minus |
| arm_3L | 5596172..5596729 | 120..677 | 100 | <- | Minus |
| arm_3L | 5596788..5596902 | 1..119 | 96 | | Minus |
