UFO06448.5prime Sequence
1100 bp (997 high quality bases) assembled on 2009-08-18
> UFO06448.5prime
CAGTCGACATGCCTTCGGAACAGCATACGAATATAAAAGTGGCGGTTCGC
GTACGGCCGTATAATGTCCGTGAATTGGAGCAAAAACAGCGGAGTATTAT
CAAGGTCATGGATCGTTCGGCACTGCTGTTCGATCCCGACGAGGAGGACG
ATGAGTTCTTCTTTCAGGGCGCCAAGCAACCGTACCGCGACATCACCAAG
CGGATGAACAAAAAGTTGACCATGGAATTCGACAGGGTATTCGATATAGA
CAATTCCAACCAGGATCTGTTCGAGGAGTGCACGGCGCCGCTGGTCGACG
CGGTGTTAAATGGATACAACTGCTCGGTATTTGTATATGGAGCCACTGGC
GCCGGAAAAACATTCACAATGCTGGGCAGCGAGGCTCATCCGGGTCTGAC
CTATCTTACCATGCAAGATCTCTTCGATAAGATCCAAGCGCAGAGCGACG
TGCGCAAGTTCGATGTGGGGGTATCCTATCTAGAGGTGTACAACGAACAT
GTGATGAATCTGCTAACTAAATCGGGCCCTTTAAAACTTCGCGAGGACAA
CAATGGCGTGGTGGTCAGTGGTCTTTGTCTCACGCCCATCTACAGTGCCG
AGGAGCTGCTAAGAATGCTGATGCTGGGCAACTCTCATCGCACTCAGCAC
CCCACAGATGCCAATGCAGAGAGTTCCAGGTCACATGCCATCTTCCAGGT
GCACATTAGGATCACGGAGCGCAAGACCGACACCAAAAGAACGGTCAAAC
TATCCATGATCGATCTGGCGGGCAGTGAGAGGGCGGCCAGTACGAAAGGC
ATTGGAGTGCGATTCAAGGAAGGCGCCAGCATCAACAAAAGTCTCTTAGC
TTTGGGAAATTGCATAACAAGCTAGCCGACGGCTTAAAGCACATCCCGTA
CCGCGACTCGAACCTGACACGCATCCTGAAGACTCGTTGGGCGGAAATGT
CGCACATTGATGGTGGCCAATGTCTCGATGAGCTCACTGACCTATGAAGA
TACCTACAACACCCTAGTACGCTAGCGAGCTAAGAGATCGCACGACTCTG
AAAAGAATGTTCTCAGTTCAAGATGCCACCGGTTCTTATGTGAGAAGAAT
UFO06448.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Klp67A-RB | 2991 | CG10923-RB | 163..1264 | 9..1098 | 5145 | 98.5 | Plus |
| Klp67A-RC | 2994 | CG10923-RC | 258..1359 | 9..1098 | 5145 | 98.5 | Plus |
| Klp67A-RA | 2899 | CG10923-RA | 163..1264 | 9..1098 | 5145 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9365643..9366418 | 1078..313 | 3385 | 98.5 | Minus |
| 3L | 28110227 | 3L | 9366485..9366789 | 313..9 | 1525 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:05:43 has no hits.
UFO06448.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:28 Download gff for
UFO06448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp67A-RA | 143..1254 | 1..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:49 Download gff for
UFO06448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp67A-RA | 154..1265 | 1..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:19 Download gff for
UFO06448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp67A-RA | 154..1265 | 1..1100 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:19 Download gff for
UFO06448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9365620..9366417 | 314..1100 | 97 | <- | Minus |
| 3L | 9366485..9366796 | 1..313 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:49 Download gff for
UFO06448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9358720..9359517 | 314..1100 | 97 | <- | Minus |
| arm_3L | 9359585..9359896 | 1..313 | 98 | | Minus |
