UFO06449.5prime Sequence
1113 bp (1014 high quality bases) assembled on 2009-08-18
> UFO06449.5prime
CAGTCGACATGTCGACCAAGAACAAGAAAGCCGCCGGAGGCAACGGAGTT
GCGCCGAAACAAACCCGCCAGCAGTCGCACGACTCGCAGGACTACAGCTC
CTTCAAGACAGTGCTCTTCTACTGCATGCTTATCGTTTTCCTGCCCGTGC
TGACCTTCTTTGTGCTGAAGGGCTTCGTTCTGGACCAGTTCCTCGACATT
TCCGAAGTCAAAGTGAACATAGCATCCGCCGTGGGAGCGGTCGTTGCATT
GCACATCGCCCTGGGACTCTATATATACAGGGCCTACTTTGGGGCACCCG
GTTCCAAGGGCTCCAAAACGGACGCAAGCTTTCTAGACCATTCGTTTGGC
GCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAA
TCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCAC
CAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGG
AGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGA
TATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCA
TTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTG
AATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCA
TGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCA
AAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTC
AATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACAT
CTTGCGAATATATGTGTAGAAACTGCCGGAAATCGTCGTGGTATTCACTC
CAGAGCGATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAGGT
GACACTATCCCATATCACCAGCTCCACCGTCTTTCATGCATACGAAATCC
GATGAGCATCATCAGGCGGCAGATGTGAATAAGCGATAAACTTGTGCTTA
TTTTCTTTACGTCTTAAAGCCGTAATATCAGCTGACCGCTGTAAAGGTAC
TGACACTGACTGA
UFO06449.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5969-RA | 947 | CG5969-RA | 116..430 | 9..323 | 1575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20474032..20474274 | 81..323 | 1215 | 100 | Plus |
| 3L | 28110227 | 3L | 20473898..20473970 | 9..81 | 365 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:38:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..290 | 892..950 | 132 | 73.3 | Plus |
UFO06449.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:38:37 Download gff for
UFO06449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5969-RA | 102..419 | 9..327 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:48 Download gff for
UFO06449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5969-RA | 116..433 | 9..327 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:13 Download gff for
UFO06449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5969-RA | 116..433 | 9..327 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:13 Download gff for
UFO06449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20473898..20473969 | 9..80 | 100 | -> | Plus |
| 3L | 20474032..20474284 | 81..334 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:48 Download gff for
UFO06449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20466998..20467069 | 9..80 | 100 | -> | Plus |
| arm_3L | 20467132..20467384 | 81..334 | 97 | <- | Plus |
