UFO06453.5prime Sequence
1122 bp (1020 high quality bases) assembled on 2009-08-18
> UFO06453.5prime
CAGTCGACATGTTCAAGTTGCTGGTGCTCTCGTGCCTTTTGGCTTTGGCT
CTACCTTCGCTGGCGGAGGTTGGCTGGTGGAAGACGGGTCAGTTCTACCA
GATCTATCCCAGATCTTTTAAGGATAGCGATGGCGACGGCGTGGGAGATC
TCATAGGTATTACGCAACAGCTGCCTTACCTAAAGGAAATTGGCATCACA
GCCACCTGGCTTTCCCCGATCTTCACCTCACCCATGGCTGATTTCGGCTA
CGATGTGGCTGATCTTAAGGGTATTGATCCCATATTCGGCACAATGGAGG
ATTTCGAGGCCCTGCTTGCGCGCGCCAAAGAGCTGGACATCAAAATCATT
CTGGACTTTGTGCCCAACCACACCAGTGACGAGTGCGACTGGTTCATACG
ATCGGCAGCTGGCGAGGAGGAGTACAAGGATTTCTATGTTTGGCACACCG
GCAAGGTGGTCAACGGAATCCGCCAGCCACCCACCAACTGGGTCTCCGTG
TTCCGCGGATCCATGTGGACCTGGAACGAGCAACGGCAGGCGTACTACCT
CCACCAATTCCACGCCAAACAGCCCGATCTAAACTACCGCAACCCCAAGG
TTGTTGAAGCCATGAAGGATGTACTGCGCTTCTGGCTGCGAAAGGGGGCT
TACGGCTTCCGCATCGACGCCGTTCCTCATGTCTACGAAATTCCAGCTGA
TGCCGACGGCAACTGGCCCGATGAACCGCGGAACGAGGCGGTGAGCGATC
CCGAGGACTACACTTTACCTGCAGCACATCTACACCACCGATCAACCCGA
GACCCTGGAGCTGGTTTACGCTTTCCGCGATGTGATCGAGGAAATAGACG
CCGAGCTGGGTGGCGACGACCGCGTCCTGCTCACCGAGGCCTACTCTCCT
CTGGAAGTTTTGATGCAGTACTATGGAAATGGCACTCACTGGCTCCAGAT
CCCTTCATTTCGAGCTGCTGGCAGATCAGCTACAGCTCGATGCCTACATT
ACTCGGAGCTGATCCACACTGCTGACAAATGCAGAACGTCAGGGCTACTG
GTGTCGCCAACCACGAACAAGAGTCGCATTGCTCCGGATGGGCGCGATCG
CATCGACCCTGCCTGATCTATC
UFO06453.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mal-A3-RA | 1795 | CG8695-RA | 36..1161 | 8..1112 | 4975 | 97.4 | Plus |
| Mal-A5-RC | 1988 | CG30359-RC | 240..592 | 93..445 | 430 | 75.1 | Plus |
| Mal-A5-RA | 2045 | CG30359-RA | 240..592 | 93..445 | 430 | 75.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8456777..8457649 | 1018..154 | 3930 | 98.5 | Minus |
| 2R | 25286936 | 2R | 8457707..8457857 | 158..8 | 755 | 100 | Minus |
| 2R | 25286936 | 2R | 8463133..8463401 | 177..445 | 340 | 75.1 | Plus |
| 2R | 25286936 | 2R | 8459103..8459264 | 285..446 | 300 | 79 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:11:34 has no hits.
UFO06453.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:38:42 Download gff for
UFO06453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LvpL-RA | 25..1047 | 1..1018 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:49 Download gff for
UFO06453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mal-A3-RA | 32..1054 | 1..1018 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:05 Download gff for
UFO06453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mal-A3-RA | 32..1054 | 1..1018 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:05 Download gff for
UFO06453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8456777..8457646 | 157..1018 | 98 | <- | Minus |
| 2R | 8457709..8457860 | 1..156 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:49 Download gff for
UFO06453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4344282..4345151 | 157..1018 | 98 | <- | Minus |
| arm_2R | 4345214..4345365 | 1..156 | 97 | | Minus |
