UFO06454.5prime Sequence
1146 bp (1055 high quality bases) assembled on 2009-08-18
> UFO06454.5prime
CAGTCGACATGTCCGAGAGTAAGCAGCCAGTGCTTAGTAGAACTCAGACA
TCCGCCGACTACGGCAGCACGCTCCGGACGGATACGCCACGCCGACCCAC
ATTTATTCCGATCGAATCCCCGCGTCGCTATTCGAAAATGGCCCACGGTT
CCCTGTCCGGCCACGAGGCCGAGAATCGCCTCCAGAGACTGGAGTACTTC
CTTAACGTTCTCAACCAGATGTGCATTGGATTTATCACCATCTATATTTC
CTATCTCACGCTGCGAACGGGGCTCTCGGGCACGGGTCTGCATGCCTGGC
TAGTGACCATCGGGTTCTCCTTCTTCATGGCCGAGGGCGTCATGATCCAC
TACGGCGGCAATGTGCTGACAAATGGATACAAGCGTCAGACGAAGACCAC
CATTCACTGGGTGCTCCTGACTTTGGGAGGCGGTTGCGGGGCAGCTGGTG
CTCTTATCAAGATGATTCAAAAGGGGTTTTTGCTGCAATCGACACATGGG
AGGCTGGGGATGACCGCCTTCGTACTGTGCATTCTGGCCATGTCCTCGGG
ACTGGCTGCACTTTTCTCCAGCCGCATCAAGAAGCTAATCACACCATTGC
TGAACAAGACGTTCCACAACTTCCTGGGATTCGCGTGCTTTGTGATCGCA
CTGGTGACCCAGTACTATGGCTACCAGACGGGCTACTTTAAGAGCCGAAG
TGAGACGGATTTCCAAATCCTGATGAAGTGCCTCACCCTCATATCGTTGG
TCCTGTCGAGCTACGGACCGATGAAAGGCACTCTATCAGAAATGCAAAAA
TATATCGCAACAGTTTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGG
CCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAAC
TAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACAATAAAA
AACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGA
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCCACTTCATCGCAGTACTGTTGTTATTTCATTAAGCA
TTTGCGACTGGGAGCCATCCAAACGCATGTGACTGAATTGCCACGA
UFO06454.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:16:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13077-RA | 1146 | CG13077-RA | 274..1080 | 9..816 | 4000 | 99.8 | Plus |
| CG13077-RB | 849 | CG13077-RB | 1..783 | 33..816 | 3880 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:16:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19566136..19566441 | 9..314 | 1530 | 100 | Plus |
| 2L | 23513712 | 2L | 19566985..19567293 | 507..816 | 1500 | 99.7 | Plus |
| 2L | 23513712 | 2L | 19566507..19566701 | 314..508 | 960 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:16:46 has no hits.
UFO06454.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:38:43 Download gff for
UFO06454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13077-RA | 271..1081 | 1..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:02:16 Download gff for
UFO06454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13077-RA | 270..1080 | 1..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:37 Download gff for
UFO06454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13077-RA | 270..1080 | 1..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:37 Download gff for
UFO06454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19566508..19566700 | 315..507 | 99 | -> | Plus |
| 2L | 19566132..19566441 | 1..314 | 98 | -> | Plus |
| 2L | 19566986..19567293 | 508..816 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:02:16 Download gff for
UFO06454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19566132..19566441 | 1..314 | 98 | -> | Plus |
| arm_2L | 19566508..19566700 | 315..507 | 99 | -> | Plus |
| arm_2L | 19566986..19567293 | 508..816 | 99 | == | Plus |
