UFO06457.5prime Sequence
1098 bp (1004 high quality bases) assembled on 2009-08-18
> UFO06457.5prime
CAGTCGACATGGACTACGAGAAGCTGGCGTTGAACGCGGGCGGAAGCGGC
AGCGGTGCCGAGCAGGACTTAGGCATGTGCGGTGGTCAGGAGCTGCTCGA
TGGCAGGGGCAAGGAGAAGGCGCGTCGCTACTGGACGCCCAGCGAGGAGG
AGCGCCTGTACGAGATCTGGGGACGCGACAACTGGCGCCTGACGCGCACC
GGCAAGAACACCATCTTCTTTGGCCGGTGGGCCGAGGAACTGCGCGACCG
GTTCGCCGTGGACGTGAAGCCCGAGGAGATCCAGATGAAGGTCAACCAGA
CCAGGGCCAAGTTCAGGCAAGTCAAAAAACAGCTGCAGGCGGATCCTTCG
AGCTATGCTACGCGCTGGAAGAAGTACGACATTATCAATCGCATCCTGAA
GAACCTGCACAGGCCCAAGAACGCCGATCCGCTGCCGCCAGAGGCGCTGC
TCAACAACCGCGACATGACACCGCCCCGGGATGATGCGTCCGCAGAGCAG
TTGCAGCAGCAGCCACAGCAGCAATCCGTTCAGCAGCAGCAGCAGCAAGG
CTTGGGACTGGCCAGTGAGCCAAGCACTGCCACCTATTACAATAGCAGCA
GCAATAGCAATCACGGCAGCAGCCACAACAACAACACCAGCGGCGGAGTT
AGCTTCAACACGGAGCTGTTTACGGACCAGTATGACGAGGTGGTCAAGCA
GGAGTACGAGGACGATGAGTACCGCTCCATTCCCTTTCAGGAGCAGTTGC
AACAGTATTCCCCAGCCGAGCCGGCTCAGCTGCTCGAGCTGCAGACGCCA
CAGCAGCAGCAACAACTGCAGCAGCAGCAGCAACAACAGCAGCAGTTCCA
AACAAACTATGAGTCGCAATTTCAGCAGCAGCCGGCTCAATTCAATAACA
ACAGCGTTATTAGCACTGCGCCACATCGACCGTCAACCATCAGCCCATAA
CGGCGGTAGCCTATATCATAGCAGCATACACCATCAGCGTGACCACAAAC
GCAAACGAGCATGCCAGCGCCGGTGCCGCACAGTATCGGCATCGTCCGCT
GCAGCTTCAGTCGACACAACAGCGTGCGTGGCTTCCGTCCTGTGCCGG
UFO06457.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7239-RA | 1752 | CG7239-RA | 186..1249 | 9..1061 | 5025 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5802770..5803488 | 315..1027 | 3320 | 98.7 | Plus |
| 2L | 23513712 | 2L | 5802405..5802713 | 9..317 | 1545 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:45:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2314..2656 | 496..844 | 310 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2666 | 494..833 | 258 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6956 | 578..822 | 252 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6857 | 504..641 | 243 | 66.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6754..7118 | 494..876 | 242 | 56 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6692..7089 | 510..918 | 236 | 55.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2856 | 452..1000 | 226 | 55.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2352..2850 | 590..1073 | 184 | 52.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2760..2832 | 572..644 | 176 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2552 | 595..847 | 171 | 56.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3219..3345 | 507..644 | 159 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2745..2989 | 384..636 | 140 | 56.7 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7942..7994 | 598..653 | 119 | 73.2 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9386..9438 | 598..653 | 119 | 73.2 | Plus |
| invader2 | 5124 | invader2 INVADER2 5124bp | 656..725 | 599..667 | 113 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1554..1602 | 590..639 | 112 | 72 | Plus |
UFO06457.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:38:45 Download gff for
UFO06457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7239-RA | 145..1214 | 1..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:04 Download gff for
UFO06457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7239-RA | 180..1249 | 1..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:52 Download gff for
UFO06457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7239-RA | 180..1249 | 1..1061 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:52 Download gff for
UFO06457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5802399..5802712 | 1..316 | 99 | -> | Plus |
| 2L | 5802772..5803527 | 317..1061 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:04 Download gff for
UFO06457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5802399..5802712 | 1..316 | 99 | -> | Plus |
| arm_2L | 5802772..5803527 | 317..1061 | 98 | | Plus |
