UFO06458.5prime Sequence
1109 bp (986 high quality bases) assembled on 2009-08-18
> UFO06458.5prime
CAGTCGACATGCTGGTGCCGTCGGACATGATTGCGGCGCAGTCCAAGATG
GTCTACCAGATGAACAAGTACTGTGCGGACCGTGTCCAGGTGCGCAAGGC
GCAGATCCACAAGCAGATCCAGGAGGTGTGTCGCATCGTCCAGGACGTGC
TCAAGGAGGTGGAGGTGCAGGAGCCGCGCTTCATATCCTCGCTGAACGAC
TACAACGGTCGCTTCGAGGGCCTGGAGGTCATATCGCCCACGGAATTCGA
GATCATCATCTACCTGAATCAGATGGGCGTGCTCAACTTTGTGGACGATG
GCACCTTGCCGGGATGTGCCGTCCTGAAGCTGAGCGATGGAAGGAAGAGA
TCCATGTCCCTGTGGGTGGAGTTCATCACGGCCAGTGGGTATCTGTCCGC
CCGAAAGATCCGCTCCAGGTTCCAGACCCTGGTGGCCCAGGCCTGCGACA
AGTGCGCCTACCGCGACATTGTCAAGATGATCGCCGACACCACGGAGGTA
AAGCTGCGCATCCGGGAGCGCATCATTGTCCAGATTACGCCCGCCTTTAA
GTGCGCCGGCCTTTGGCCGAGATCCGCCTCCCACTGGCCGCTGCCGGGCA
TCCCATGGCCGCATCCCAACATCGTCGCCGAGGTGAAGACCGAGGGATTC
GACATGCTATCCAAGGAGTGCATCGCACTGCAGGGCAAGAACTCCGCCAT
GGAGGGCGACGCCTGGGGTGCTCAGCTTCACCGACGCCGAAAACCGGCTG
CTGCAAAGGAGCGAGTCGACGACGCTGCCTGAGCATTCTGAAGACCCTGC
GTGATCGGCACCTGGACCTGCCCGGCAATCCGGGTGACGTCGTACCACCT
GAAGACCCTGCTGCTCTACGAATGCGAGAAGCATCCGCGCGAGATGGAAT
GGGAGGAGAACTGCATCGCGGACCGGATCAATGGGATATTGCTGCAGCTG
ATATCCTGCCTGCAGTGCCGCCGCTGTCCGCACTACTCTGCCCAATATGG
ATCTGTCAGGGCAGTCGCTGGTGCCCTGAGAATGCGCTAGCAGTTTGCGC
TCACCCGGATCATGCTGAACATGTCGGTGCTGGAGACCTGGCCAGCTTTT
CTGAACATT
UFO06458.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mab-21-RA | 2082 | CG4746-RA | 360..1428 | 9..1068 | 4950 | 98.3 | Plus |
| CG4766-RA | 2673 | CG4766-RA | 728..1586 | 135..987 | 1745 | 80.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6012076..6012822 | 756..9 | 3690 | 99.9 | Minus |
| X | 23542271 | X | 6008909..6009159 | 1006..757 | 1130 | 98.4 | Minus |
| X | 23542271 | X | 5998948..5999499 | 756..213 | 1090 | 80.7 | Minus |
| X | 23542271 | X | 5998595..5998816 | 987..765 | 495 | 82.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:44:47 has no hits.
UFO06458.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:37 Download gff for
UFO06458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mab-21-RA | 355..1445 | 6..1085 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:02 Download gff for
UFO06458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mab-21-RA | 358..1448 | 6..1085 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:45 Download gff for
UFO06458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mab-21-RA | 358..1448 | 6..1085 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:45 Download gff for
UFO06458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6008832..6009157 | 759..1073 | 94 | <- | Minus |
| X | 6012075..6012824 | 6..758 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:02 Download gff for
UFO06458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5902865..5903190 | 759..1073 | 94 | <- | Minus |
| arm_X | 5906108..5906857 | 6..758 | 99 | | Minus |
