UFO06459.5prime Sequence
526 bp (352 high quality bases) assembled on 2009-08-18
> UFO06459.5prime
CAGTCGACATGTCTGCCAGCGCCACCAACGGCACGCACTACGAGCAGCTG
CACCAAGGCCGCACCAAGATGTACAAGTCAAAGGTGGACGTCGTCCTGGG
AGCCCAGTGGGGCGACGAGGGCAAAGGCAAAGTGGTGGACATGCTGGCCT
CCGATGTGGACATCGTCTGCAGGTGTCAGGGCGGCAACAACGCTGGACAC
ACTGTGGTGGCTAATGGCACGGAGTTCGACTTCCATCTCCTGCCCAGTGG
AGTTGTGAACGAAAAATGCGTTTCCGTCATTGGCAATGGCGTCGTCATTC
ACCTGCCCTCGCTATTCGACGAGGGGGTGAAGAACAAAGCCAAGGGGCTG
CCCACCCAAAAGAACGGGCTGATCATCTCGGATCCGGGCCCACCTGGTTT
TCGACTTCCATCACCTGGTGGATGCCTTGCAGGGAGGCTTAAAAGGGCGG
CAAGGTCCCTCGGGAACCCCCAAAAAAGGCTTCGTTCCCTTTTACTCCCA
AAAAGGCTTCCCCCGATGGGAACCCA
UFO06459.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AdSS-RA | 1951 | CG17273-RA | 135..640 | 9..519 | 1920 | 92.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20830275..20830446 | 180..9 | 860 | 100 | Minus |
3R | 32079331 | 3R | 20827979..20828085 | 283..177 | 520 | 99.1 | Minus |
3R | 32079331 | 3R | 20826174..20826344 | 454..282 | 495 | 88.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:11:31 has no hits.
UFO06459.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:38:35 Download gff for
UFO06459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17273-RA | 163..630 | 1..473 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:46 Download gff for
UFO06459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17273-RA | 128..595 | 1..473 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:02 Download gff for
UFO06459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AdSS-RA | 128..595 | 1..473 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:02 Download gff for
UFO06459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20827980..20828082 | 180..282 | 99 | <- | Minus |
3R | 20830276..20830453 | 1..179 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:46 Download gff for
UFO06459.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16653702..16653804 | 180..282 | 99 | <- | Minus |
arm_3R | 16655998..16656175 | 1..179 | 97 | | Minus |