Clone UFO06459 Report

Search the DGRC for UFO06459

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:64
Well:59
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG17273-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO06459.5prime Sequence

526 bp (352 high quality bases) assembled on 2009-08-18

> UFO06459.5prime
CAGTCGACATGTCTGCCAGCGCCACCAACGGCACGCACTACGAGCAGCTG
CACCAAGGCCGCACCAAGATGTACAAGTCAAAGGTGGACGTCGTCCTGGG
AGCCCAGTGGGGCGACGAGGGCAAAGGCAAAGTGGTGGACATGCTGGCCT
CCGATGTGGACATCGTCTGCAGGTGTCAGGGCGGCAACAACGCTGGACAC
ACTGTGGTGGCTAATGGCACGGAGTTCGACTTCCATCTCCTGCCCAGTGG
AGTTGTGAACGAAAAATGCGTTTCCGTCATTGGCAATGGCGTCGTCATTC
ACCTGCCCTCGCTATTCGACGAGGGGGTGAAGAACAAAGCCAAGGGGCTG
CCCACCCAAAAGAACGGGCTGATCATCTCGGATCCGGGCCCACCTGGTTT
TCGACTTCCATCACCTGGTGGATGCCTTGCAGGGAGGCTTAAAAGGGCGG
CAAGGTCCCTCGGGAACCCCCAAAAAAGGCTTCGTTCCCTTTTACTCCCA
AAAAGGCTTCCCCCGATGGGAACCCA

UFO06459.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:32
Subject Length Description Subject Range Query Range Score Percent Strand
AdSS-RA 1951 CG17273-RA 135..640 9..519 1920 92.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20830275..20830446 180..9 860 100 Minus
3R 32079331 3R 20827979..20828085 283..177 520 99.1 Minus
3R 32079331 3R 20826174..20826344 454..282 495 88.4 Minus
Blast to na_te.dros performed on 2014-11-28 20:11:31 has no hits.

UFO06459.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:38:35 Download gff for UFO06459.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17273-RA 163..630 1..473 93   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:46 Download gff for UFO06459.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17273-RA 128..595 1..473 93   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:02 Download gff for UFO06459.5prime
Subject Subject Range Query Range Percent Splice Strand
AdSS-RA 128..595 1..473 93   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:02 Download gff for UFO06459.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20827980..20828082 180..282 99 <- Minus
3R 20830276..20830453 1..179 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:46 Download gff for UFO06459.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16653702..16653804 180..282 99 <- Minus
arm_3R 16655998..16656175 1..179 97   Minus