UFO06460.5prime Sequence
1073 bp (994 high quality bases) assembled on 2009-08-18
> UFO06460.5prime
CAGTCGACATGGGCGTCAAGGAATTATGGGGTGTTTTAACGCCCCATTGT
GAACGTAAACCCATTAATGAACTGCGGGGAAAGAAAGTGGCCATCGACCT
GGCCGGCTGGGTGTGCGAATCTCTTAATGTTGTGGACTACTTTGTGCATC
CAAGGCATCATTTAAAGAACCTCTTCTTTCGCACTTGCTACTTGATTTGG
GAGCAAGTTACTCCGGTTTTCGTTTTGGAGGGAGTTGCTCCAAAACTCAA
GAGCCAGGTGATAGCCAAAAGGAATGAGCTCCAGTTTCGGGGAGTGAAGC
CCAAGAATTCGCCTGAGTGCACCCAAAGTCAGCCGTCCAAGGGCGACAAG
GGACGCAGCCGGTTCAACCATGTTCTCAAGCAGTGCGAAACGCTGCTGCT
CTCCATGGGAATCCAGTGCGTCCAAGGTCCCGGCGAGGCGGAGGCCTACT
GTGCCTTTCTCAACAAGCATGGCCTAGTGGACGGCGTCATTAGCCAGGAC
TCGGATTGCTTTGCCTATGGAGCCGTTCGTGTCTATCGCAACTTCTCCGT
TTCCACCCAAGGAGCCCAGGCAGCCGCCGGCGGAGCTGTGGACATCTACG
ACATGCGGGAGATCACATCCCGAATGGACTTTGGCCAACAGAAGATCATT
GTGATGGCTTTGCTCTGCGGCTGTGATTATTGTCCTGATGGCATAGGTGG
CATTGGCAAGGATGGCGTCCTAAAGCTGTTCAACAAGTACAAGGAGACTG
AGATTTTGGATAGAATGAGAAGCTGGCGTGGTGAAACCGATAAATACAAT
GCCTTGGAGATCCGAGTGGACGACAAATCCATCTGCAGCAATTGTGGCCA
CATTGGCAAGACCCAGAGCCACACAAAAGTGGCTGCAGTGTGTGTCGCAC
ACACAAAGGCTGCGATGAGAGTCTCTGGAAAGAACAACGACTATCCATTA
GTCCGAGTTGACTTTGAGGCGGAAGCCCTATATCTCTGACTTTCCCACGA
AGAGATCATGCGAGTTCTCAGCGACCCGAACCATTCATCTAAATCTCACT
GGCGGCACAATCTTGTCATCATC
UFO06460.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:13:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gen-RA | 2273 | CG10670-RA | 76..1153 | 9..1068 | 4970 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:13:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5151770..5152076 | 473..167 | 1535 | 100 | Minus |
| 3L | 28110227 | 3L | 5151415..5151704 | 763..474 | 1450 | 100 | Minus |
| 3L | 28110227 | 3L | 5151179..5151348 | 930..762 | 800 | 99.4 | Minus |
| 3L | 28110227 | 3L | 5152143..5152301 | 167..9 | 795 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:13:50 has no hits.
UFO06460.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:38:36 Download gff for
UFO06460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gen-RA | 47..1124 | 9..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:26 Download gff for
UFO06460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gen-RA | 76..1153 | 9..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:43 Download gff for
UFO06460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gen-RA | 76..1153 | 9..1068 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:43 Download gff for
UFO06460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5151179..5151346 | 764..930 | 99 | <- | Minus |
| 3L | 5151415..5151704 | 474..763 | 100 | <- | Minus |
| 3L | 5151770..5152076 | 167..473 | 100 | <- | Minus |
| 3L | 5152144..5152301 | 9..166 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:26 Download gff for
UFO06460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5144279..5144446 | 764..930 | 99 | <- | Minus |
| arm_3L | 5144515..5144804 | 474..763 | 100 | <- | Minus |
| arm_3L | 5144870..5145176 | 167..473 | 100 | <- | Minus |
| arm_3L | 5145244..5145401 | 9..166 | 100 | | Minus |
