UFO06462.5prime Sequence
1110 bp (1014 high quality bases) assembled on 2009-08-18
> UFO06462.5prime
CAGTCGACATGGCACCAATGCCCCGAATTCAGTTACCCAATGGAAATTCT
TCCATAAAGGCTAGCACAAATGATTTTCTCTTTGCGGAAACAATGTCCGG
CGGCAGTAGTCCCACCCCCAGCAGTCCGCCATCCAGTACAGCAGGCGTTG
CCAAATCTCAGTGTTCTTCCCTTTCGGATGGCGAATCCTTTGAGGGATAT
GGCGAAAATGAGTATCCCACCCAACTTCGCGAAGCCCGCAGCTCCAATTC
CAATGGGAGCCATAATATGAGCAATCATATTAACAATAATTCTAATATCA
GCGTGGGCAACAACAGTGGACACAACCACAGTGGACACTCGAACGATGGA
AATAACAACCTAAATGGCAGCACTGGCGTCGAACTCGATTTGGCTCCACA
CGTCGGCTCATCAACACCTCAAGATGATGACGAACTAAACATAATGCCCC
GGGATAATTGGGCCAGGCGCAGTCTGCGACGAACTCCCACCAGTTCCGGC
CGCAGGCAAATTAGTTCAAATGCCTTAGCCAGCCAACTCTATAGATCATC
GAGCTTTAACTCATCGGGCCGTAGCTCCAACTGTGATACAACAGAAGACA
TGTACAGCGACATAAGCTTGGAGAATCGTCATGACTACGATTATAGGCTG
GAACTGCTGCAGCGCAAGGTGGACGATCTGTCAGATACACAGAATATAGC
TGAGGATCGGACAACCCGCACCAAGACCGAATATGCAGTCCTTCAGGCGC
GTTATCACATGCTCGAAGAGCAGTACCGAGAGTCGGAACTGCGTGCCGAG
GAGCGTTTGGCAGAGGAGCAGAAGCGGCACCGCGAGATTTTGGCCCGCGT
GGAGCGTGAAGCCTCGCTGCAGAACGAGAACTGCCAGATGAGATCCGTGC
CACCGAGATCGAGGCACGGCACTGCGGGAAGAAGCCGCCCGACTGCGTGT
CTGTGTGACAGCAGCCAATGACCTCCATCGCACGAGGACAGTGGAGCTGG
CGCGCGACCAAATCGGCGTCTGCACAGGAGCACGAGGAGCAGCACAGGCA
CTGCCCGCCACGAACAGGAAAGAGTCCCCGAGGGACTGATGCTGACCTGA
CCGGGACTTG
UFO06462.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nuf-RL | 2735 | CG33991-RL | 741..1843 | 7..1094 | 5095 | 98.4 | Plus |
nuf-RA | 2696 | CG33991-RA | 741..1843 | 7..1094 | 5095 | 98.4 | Plus |
nuf-RC | 3446 | CG33991-RC | 741..1843 | 7..1094 | 5095 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14200162..14200447 | 139..424 | 1430 | 100 | Plus |
3L | 28110227 | 3L | 14230654..14230954 | 781..1069 | 905 | 96 | Plus |
3L | 28110227 | 3L | 14230175..14230310 | 647..782 | 680 | 100 | Plus |
3L | 28110227 | 3L | 14199966..14200100 | 7..141 | 660 | 99.3 | Plus |
3L | 28110227 | 3L | 14213087..14213203 | 531..647 | 585 | 100 | Plus |
3L | 28110227 | 3L | 14200739..14200807 | 425..493 | 345 | 100 | Plus |
3L | 28110227 | 3L | 14212191..14212232 | 491..532 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:07:55 has no hits.
UFO06462.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:38:49 Download gff for
UFO06462.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RA | 731..1839 | 1..1094 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:31 Download gff for
UFO06462.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RC | 735..1843 | 1..1094 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:51 Download gff for
UFO06462.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nuf-RC | 735..1843 | 1..1094 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:51 Download gff for
UFO06462.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14230656..14230982 | 783..1094 | 94 | | Plus |
3L | 14230176..14230310 | 648..782 | 100 | -> | Plus |
3L | 14199960..14200100 | 1..141 | 96 | -> | Plus |
3L | 14200165..14200447 | 142..424 | 100 | -> | Plus |
3L | 14200739..14200807 | 425..493 | 100 | -> | Plus |
3L | 14212194..14212232 | 494..532 | 100 | -> | Plus |
3L | 14213089..14213203 | 533..647 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:31 Download gff for
UFO06462.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14193060..14193200 | 1..141 | 96 | -> | Plus |
arm_3L | 14193265..14193547 | 142..424 | 100 | -> | Plus |
arm_3L | 14193839..14193907 | 425..493 | 100 | -> | Plus |
arm_3L | 14205294..14205332 | 494..532 | 100 | -> | Plus |
arm_3L | 14206189..14206303 | 533..647 | 100 | -> | Plus |
arm_3L | 14223276..14223410 | 648..782 | 100 | -> | Plus |
arm_3L | 14223756..14224082 | 783..1094 | 94 | | Plus |