UFO06463.5prime Sequence
1139 bp (1040 high quality bases) assembled on 2009-08-18
> UFO06463.5prime
CAGTCGACATGCTTATTTTCTACGCGAAGTACGCATTTATCTTCTGGTTT
TTCGTGGGAAGCAATCAAGGTGAAATGTTGCTAATGGACAAAATCTCTCA
CGATAAGACGCTTCTCAACGTCACCGCTTGCACCCAGAATTGTCTGGAAA
AGGGCCAGATGGATTTCCGAAGCTGTTTAAAGGACTGCAGGATTAATGGA
ACATTTCCCGGGGCTCTGCGCAAGGTGCAGGAAAACTACCAGATGAACAT
GATCTGCCGCACGGAGTCGGAAATCGTTTTCCAAATAGATTGGGTGCAGC
ACAGCAGGGGAACCGAGCCGGCTCCAAATGCCACCTACATAATCCGGGTG
GATGCTGTCAAGGACGACAACAAAGAAACTGCGCTTTACCTGTCTGATGA
CAACTTTCTCATCCTGCCGGGATTGGAGTCCAACTCTACCCACAACATCA
CCGCCCTGGCGATGCACGGAGATGGCAGCTACTCCTTGATAGCAAAGGAC
CAGACCTTCGCCACCCTCATCCGAGGCTATCAGCCCAGCAAAATGGGAGC
GGTGAATCTGCTGCGGTTTGTCCCCCAACCAGACGACCTGCATCACATTG
CTGCCGAAATCGAGTGGAAGCCATCGGCGGAGAGCAACTGCTATTTCGAC
ATGGTGTCGTATTCAACCAACAGCGTGAATATGGACGAGCCACTGGAGGT
GCAGTTCCGGGATCGCAAAAAGCTGTACAGGCACACGGTGGACAACTTGG
AGTTTGACAAACAGTATCACGTTGGCGTAAGAACGGTGAACATAATGAAT
CGACTGGAGAGCGATCTGCAGTGGCTGCCAATCGCTGTTCCAAGCTGCTT
GGATTGGTATCCCTATAACTACACACTCTGCCCACCCCATAAGCCAGAGA
ATCTTACTGTGACCCAGAAGCAGTATCTGCCAAATATTTTGGGCCCTGAA
CATCACCTGGGCGCGTCCCAGATACCTGCCGGATAACTATACACCTCACA
TCTTTGATCTATTCAAAGGAGGTACGGAGCTAAACTATACACTTGACAAA
ACAGGAGCCCCTTCTATGTACCCAGATCACGTACTGGTTCCCATTCGAAA
TACATTTGTTGTCATCGCAGCGAAAAACGTATCCATGAC
UFO06463.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tor-RD | 3116 | CG1389-RD | 240..1343 | 9..1108 | 5330 | 99.2 | Plus |
| tor-RA | 3131 | CG1389-RA | 240..1343 | 9..1108 | 5330 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7708105..7708343 | 630..392 | 1195 | 100 | Minus |
| 2R | 25286936 | 2R | 7708495..7708726 | 392..161 | 1160 | 100 | Minus |
| 2R | 25286936 | 2R | 7707737..7707905 | 882..714 | 845 | 100 | Minus |
| 2R | 25286936 | 2R | 7707477..7707668 | 1074..883 | 835 | 97.9 | Minus |
| 2R | 25286936 | 2R | 7708792..7708945 | 162..9 | 770 | 100 | Minus |
| 2R | 25286936 | 2R | 7707962..7708045 | 713..630 | 420 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:02:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 519..749 | 209..437 | 125 | 55.6 | Plus |
UFO06463.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:38:50 Download gff for
UFO06463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tor-RC | 305..1448 | 2..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:23 Download gff for
UFO06463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tor-RA | 234..1377 | 2..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:45 Download gff for
UFO06463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tor-RA | 234..1377 | 2..1139 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:45 Download gff for
UFO06463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7707448..7707668 | 883..1099 | 96 | <- | Minus |
| 2R | 7707737..7707905 | 714..882 | 100 | <- | Minus |
| 2R | 7707962..7708044 | 631..713 | 100 | <- | Minus |
| 2R | 7708105..7708342 | 393..630 | 100 | <- | Minus |
| 2R | 7708495..7708725 | 162..392 | 100 | <- | Minus |
| 2R | 7708793..7708951 | 2..161 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:23 Download gff for
UFO06463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3594953..3595173 | 883..1099 | 96 | <- | Minus |
| arm_2R | 3595242..3595410 | 714..882 | 100 | <- | Minus |
| arm_2R | 3595467..3595549 | 631..713 | 100 | <- | Minus |
| arm_2R | 3595610..3595847 | 393..630 | 100 | <- | Minus |
| arm_2R | 3596000..3596230 | 162..392 | 100 | <- | Minus |
| arm_2R | 3596298..3596456 | 2..161 | 97 | | Minus |
